barSeed - Barley Seed Development Database

Probe CUST_23468_PI390587928

Source Contig U35_21030

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23468_PI390587928	Hv_44K_v2	TATGTATATGAAATTAGTCTACTGGCCGGATTTCCAATATATGAGAATGTTTTTCCAGCG	748	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26636.1	905	2e-24	721 - 780	100	60 / 60	plus	ABC14370
JLOC1	JLOC1_18082.1	868	8e-25	721 - 780	100	60 / 60	plus
Harvest21	ABC14370	794	3e-25	1 - 60	100	60 / 60	minus	ABC14370
Harvest35	U35_21030	808	3e-25	749 - 808	100	60 / 60	plus

Contig Sequence (808 bp)

>U35_21030 808 Hv_44K_v2
CAGTACGTCACCAGCGCCGCCTTCCTCCTCTCCGTCTACTCGGGCTACCTCACGGAGGCC
GGCGAGGGCGCGGCCGTGACGTGCGCCGGGGGCGCGTCGGCCGGCGCCGGCGAGGTGTTC
GCGCACGCCAGGGCGCAGGTGGACTACGTGCTGGGGAGCAACCCGCGCGGGATCAGCTAC
CTGGTGGGGTACGGCGCCAAGTTCCCGGCGAGGGTGCACCACCGCGCGGCGTCCATCGTG
CCGTACAAGGACAGGAAGGAGTTCATCGGGTGCGCGCAGGGGTTCGACGACTGGTTCGGC
CGCAAGAGCGCCAACCCCAACGTCGTCGTCGGCGCCATCGTCGGCGGGCCCGACCGCCAC
GACAGGTTCAGGGACGACAGGGTCAACTACATGCAGACGGAGGCGTGCACCTACAACACC
GCCCCCATGGTCGGCATGTTCGCCATGCTCAACAGGGTGGCGCGCCAGCAGGACCCCACG
CCGGCGACGACACGGCCGGAGGGCACCACAAGTACTGCGGCGGAGTGAGGTGTAAATTAT
ATATATATACTCTAGGCAGTAGTAATACGTGCAGGGGGATCTGTACAATTTTGCCCCTCC
TATTCTTTTGTTCATTCTTTTCTGGTAGACGCGAAGGCTCTTCTCTTCTTCGCAGGGATT
ATTTGTATACGGGAAAAATAGGGTGGACGCATTTGACAAGCAAATGCGAATTCCCTCCCC
GTAAATATAAGATAAGAGGAAAAATATATATGTATATGAAATTAGTCTACTGGCCGGATT
TCCAATATATGAGAATGTTTTTCCAGCG

Homology of Contig U35_21030 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g13830.1	381	6e-92	protein\|endoglucanase, putative, expressed
Brachypodium v1_2	Bradi1g44430.1	545	2e-87
Arabidopsis v10	AT2G32990.1	525	3e-52	\| Symbols: AtGH9B8, GH9B8 \| glycosyl hydrolase 9B8 \| chr2:14003361-14005844 FORWARD LENGTH=525