barSeed - Barley Seed Development Database

Probe CUST_23466_PI390587928

Source Contig U35_21032

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23466_PI390587928	Hv_44K_v2	CTCAATAATAAACATGGCTGCTGCCTACTTGTATTCTTTGATTTAGAATCAGAGTTCTTG	731	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.128	1.357	1.663	0.946	0.329	0.346
Raw	390.245	716.057	784.579	729.259	83.337	96.850

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22486.1	745	2e-24	599 - 658	100	60 / 60	plus	ABC14222
JLOC1	JLOC1_15591.1	673	8e-25	527 - 586	100	60 / 60	plus
Harvest21	ABC14222	812	3e-25	732 - 791	100	60 / 60	plus	ABC14222
Harvest35	U35_21032	812	3e-25	732 - 791	100	60 / 60	plus

Contig Sequence (812 bp)

>U35_21032 812 Hv_44K_v2
CACCGGGTGCGCACGTGGGAGCACTCGCCGACCACCGTGCTCGTCCACATGCTGCTCGTC
GCCGTCGTGCTCTGCCCGGAGATGATCCTGCCCACCGTCTGCCTCTACCTCTTCCTCGTC
CTGCTCTGGCGCTACCGGTGGCGCCCGCGCGAGCCGGCCGGCATGGACCCGCGGCTGTCG
CACGTGGACAGCGTGAGCCCCGACGAGCTGGACGAGGAGTTCGACGGGCTCCCCTCGGGC
CGCCCCGCCGACGTGGTGCGGATGCGGTACGACCGGCTGCGCGCCGTGGCCGGGCGCGCG
CAGACGCTTCTCGGCGACGTGGCCGCGCAGGGGGAGCGCGTGGAGGCGCTGCTGTCGTGG
CGCGACCCGCGAGCGACGGGGGTGTTCGCCGTGGCCTGCCTGCTGACGGCGCTGGTGCTC
TACGCCGTGCCCTTCAAGGCGCTGCTGCTGGGCATGGGCTTCTTCTACCTCCGGCACCCC
AGGTTCCGCGGCGACATGCCGTCCGCCGCATTCAACTTCTTCCGCCGCCTGCCGTCGCTG
TCCGACCGGGTGCTCTAGCTGCTACGATCCATCCATCGATCGATCAACCGGCGTTGCTTC
TCTTTGAGCTTGCTTATTACTGTTGTTGTTCTACTTTGGTGTGATCCACTGCTGCTTATA
GTGAGATCATCGTTTGATCATTTGTTTGCACACAGAAGGAAAGCCTCCGAGGCCTACTTA
GTGATGCTAATCTCAATAATAAACATGGCTGCTGCCTACTTGTATTCTTTGATTTAGAAT
CAGAGTTCTTGAATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_21032 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g44890.1	1055	5e-93	protein\|anthranilate phosphoribosyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g13460.1	1040	5e-101
Arabidopsis v10	AT3G03680.1	1017	6e-67	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein \| chr3:907624-910677 FORWARD LENGTH=1017