barSeed - Barley Seed Development Database

Probe CUST_23464_PI390587928

Source Contig U35_21034

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23464_PI390587928	Hv_44K_v2	AACACTTGAACTGTAGAATTCTGGAATGTGCCAAAACCAGAGCACGAGTTTGGAGTCGTG	1591	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.034	2.275	1.029	0.741	0.764	0.336
Raw	109.534	187.766	75.861	83.240	29.212	14.646

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3156.1	1802	2e-24	22 - 81	100	60 / 60	minus	ABC14089
MLOC	MLOC_3156.2	1821	2e-24	22 - 81	100	60 / 60	minus	ABC14089
JLOC1	JLOC1_1891.2	1930	8e-25	1758 - 1817	100	60 / 60	plus
JLOC1	JLOC1_1891.1	1875	8e-25	1703 - 1762	100	60 / 60	plus
Harvest21	ABC14089	1673	3e-25	1592 - 1651	100	60 / 60	plus	ABC14089
Harvest35	U35_21034	1673	3e-25	1592 - 1651	100	60 / 60	plus

Contig Sequence (1673 bp)

>U35_21034 1673 Hv_44K_v2
CTACCAACCACCATGTCGCTCTCTTCCTCCGTCGTCTCCTCCCGAAGCCGCGACCGGGAC
TGCGCCGACGGGGAGCAGCCTCTCCTCCCGCACTCGAGCCTCGAGATCGCCGGCGCGCGG
CGCGGCCTCCTCGCGGGCTTCGAAAGCCTCCGCCGCCCGTACCGCGCCTTCCCCGTCTTC
GCATCCAACCGCCACGTCGAGACCATCTTCGCGGCCTTCACGCGCTCGCTCCCCGCCGTG
GCATTCCGGCGCGAGTGCCTGCGCACCCCGGACACGGGAGCCGTCGCCCTCGACTGGGTC
TCCGGCGACGACCGCACGTTGCCCGGAGATGCACCTGTGCTAATCCTTCTGCCCGGTCTG
ACAGGGGGGAGTCAGGATACATATGTACGGCATATGCTTTTGAGAGCTAGAAGCAAAGGA
TGGCGTGTTGTGGTATTCAATAGCCGTGGATGTGCAAACAGTCCTGTGACCACAGCAAAG
TTCTATTCTGCTTCATTTACTGGAGATCTCCGTCAAGTAGTTGATCATGTTTTATCCCGT
TACCCTCAATCTAATATCTATGCTGCTGGCTGGTCTCTTGGAGCAAATATTCTTGTGCGC
TACCTTGGCGAGGAGACTGATAAATGCTCTCTTTCTGGAGCAGTGTCCATGTGCAATCCG
TTTAATTTGGTAATAGCAGATGAAGATTTCCACAAAGGGTTCAACAACGTCTATGATAGA
GCACTTGCTAATTCTCTGAGGGCTATATTTAAGAAGCATGCACTTCTTTTTGAAGGATTG
GATGGTGAATATGACATACCAAAGGCAGCCAATGCAAAAACTGTTAGAGATTTTGATGAA
GGCCTAACCCGAGTTTCATTTGGTTTCAGGTCAGTAGATGATTACTACAGCAACTCAAGC
AGCTCAGATTCCATCAAGAATGTTTCCATACCCTTATTGTGCATACAGGCGGATAACGAT
CCAATTGCACCATCCAGGGGAATTCCTAGAGAAGATATCAAGGCAAATCCGAACTGCCTA
CTGATAGTAACACCAGAGGGTGGTCATCTTGGATGGGTAGCAGGCAATGAAGCTCCTTTT
GGATGTCCTTGGACTGACCCTATTGTCATGGAGTTTCTAGAACATGTTCATAATGAAACG
GGCTCAACCACCAAGAATACTGTGTTCAGTGAGCCGCAGGGTGTTCCACAGACATCAGTA
CCGCACTTGTCCGAGCATGTGTAGAGATAGTAACATTGCGTTTCCATTCGATGCACGCGT
TTTATACACATAGTTAGGCTTCAATTGTTGTTCTGCAGCGGAAATGTGCTACATTTGCTC
CATCAACACAAAGGTTCTCAACATCTTGAAAATTTATTGGCGTCCGTAATTCATTGCTGG
CTCCACATTTGACTGAAACTTTGACTCGAAGCATTTATTTGCCATTTGGAGGCAGGCTGT
ATCAAACTATACCGTGTTCGTGTTGTATAGAGTATTTCAACCGCATTCATCCAGCACTCC
GTCTTGTATGTGTTCTCAACTTCTCATACCAATCCCTTGGAAATGTAGAGGCAGTCGCTT
CATCCAATCCATCACGCCCACAAAAGTGTTGAACACTTGAACTGTAGAATTCTGGAATGT
GCCAAAACCAGAGCACGAGTTTGGAGTCGTGGTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21034 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g43340.2	447	0.0	protein\|hydrolase, alpha/beta fold family domain containing protein, expressed
Brachypodium v1_2	Bradi3g50230.1	435	0.0
Arabidopsis v10	AT3G50790.1	408	7e-171	esterase/lipase/thioesterase family protein \| chr3:18880074-18881940 REVERSE LENGTH=408