barSeed - Barley Seed Development Database

Probe CUST_2345_PI390587928

Source Contig U35_23409

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2345_PI390587928	Hv_44K_v2	GAGCAGTGAATTGACGTACTCCCTCTGTCAATTATAGTGTAAAAAATGATCTAACATTCT	681	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.810	1.491	1.064	0.935	0.378	0.475
Raw	366.909	482.367	297.714	415.865	59.791	80.182

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54047.1	2351	2e-24	2230 - 2289	100	60 / 60	plus	ABC18763
JLOC1	JLOC1_34772.1	2219	8e-25	2111 - 2170	100	60 / 60	plus
Harvest21	ABC18763	778	3e-25	38 - 97	100	60 / 60	minus	ABC18763
Harvest35	U35_23409	778	3e-25	682 - 741	100	60 / 60	plus

Contig Sequence (778 bp)

>U35_23409 778 Hv_44K_v2
CTTGCAATAATTACTGTACTGGACATTTTACTGGTGTCAAGATTACATATNCAGTATGGA
ATAGCAGACAAATACATGGTGCTGTGGGGCTCCGCTTTGGCCGATGCAATCAACCAATTC
AAGATGATGCCGTTCCTAATCCTCTCAGGACAGCTTTGCCCGCCTGGAATCGAGGGCACA
CTGTTTGCTCTGTTCATGTCCATTAACAACCTCAGTTCGACATTAGGTTCATTCCTTGGA
GCTGCATTGACGTCAGCTTTGAACATCTCATCGGTGCAGTTTGACAATCTGGCACTCGGC
CTTGCTGTTCAGCTGATGGGCACTCTCTTACCAGTGGGATTTTTGTTTCTGATTCCAAGG
GACGTTACGGGACTAACATCATAGGAAAAGGGTTACAGACCTGATCATTATTTTTTCTAT
ACTGGTCTGTATTCCCTAGTCTTACTCATACATGCATATAGAGAAAGCAAATTGAAGCCA
GCAGAAGGTAGCTCAGTTTTGTTGAGATATGTATACATGCATATACTAGAATGAGAGGAA
GAGTGCAATAGTTGACATTACAAAGTGTTAAGCAATGACAAATCTGTGTGGCAAATGTAC
TTGCAAGAAGATGTGTCAATCTATCCATCTATCTCCCTCTGCTTTTAGCACTGATCCAGT
ATGTATATATACTGTCAAATTGAGCAGTGAATTGACGTACTCCCTCTGTCAATTATAGTG
TAAAAAATGATCTAACATTCTGTCAATCATAGTTAAAAAATGATATAACATTTGGACG

Homology of Contig U35_23409 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g14100.3	431	4e-68	protein\|BT1 family protein, putative, expressed
Brachypodium v1_2	Bradi2g08527.1	503	5e-72
Arabidopsis v10	None