- Probe CUST_23456_PI390587928
- Source Contig U35_33013
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23456_PI390587928 | Hv_44K_v2 | TACAAGCACAGTCTGACTCCTGAACTAACTTTAGGACTGGAAGCTTGATTGCTTTCCTCA | 12 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.365 | 1.209 | 1.262 | 1.775 | 0.719 | 0.833 |
| Raw | 5.057 | 31.598 | 28.314 | 62.186 | 8.188 | 11.324 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_71770.2 | 1609 | 2e-24 | 999 - 1058 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_71770.3 | 1908 | 2e-24 | 1298 - 1357 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_47720.5 | 2849 | 8e-25 | 1255 - 1314 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_47720.2 | 3118 | 8e-25 | 995 - 1054 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_47720.1 | 2589 | 8e-25 | 995 - 1054 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_33013 | 467 | 3e-25 | 13 - 72 | 100 | 60 / 60 | minus |
Contig Sequence (467 bp)
>U35_33013 467 Hv_44K_v2 TGGCAGTGGCACTGAGGAAAGCAATCAAGCTTCCAGTCCTAAAGTTAGTTCAGGAGTCAG ACTGTGCTTGTAGAAATGACAAGAATTCAAGAACGCAAGCCAGTGGTATTGGCTCGTTGA TCAGTTGACCATTACAGTCTGGAGACTTCCCTCCTAACGCCTCACAAAACCTGCCGCCTA GCAAGTCTGATAATTGCGGTGTCACCAAGTTGGCGAAATTGATCAGTGCTGAACCGATGA TGATGACTCGACTACTTGGTCATATATGTTGGTCCTGCCAATCTGTGCAAATCTCACAAA TAACCATCCTCATCCTCGTCGTCTCTACTCCAAAGCATGTCATCCTCCTTCTGTCGAAGC CCCAATACACCATCAACAATGTCCTCTTCAGCAAATGCAGACATTGTTGTAGCACCAAGC ACCTTGGTCCTGCTTGTAACAGTGTCATCAACAACATCATCCAGTTC
Homology of Contig U35_33013 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |