barSeed - Barley Seed Development Database

Probe CUST_23448_PI390587928

Source Contig U35_11640

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23448_PI390587928	Hv_44K_v2	GCAGCAATACATCAAATCGGAGTTATCGCCATGTATAGGGGCAAATAACAGGGCAATTAG	473	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362026	3555	7e-23	521 - 580	98	59 / 60	plus	ABC08447
MLOC	MLOC_66141.1	608	7e-23	312 - 371	98	59 / 60	plus	None
JLOC1	JLOC1_43571.1	607	4e-23	311 - 370	98	59 / 60	plus
Harvest21	ABC39158	469	3e-25	410 - 469	100	60 / 60	plus
Harvest35	U35_11640	533	3e-25	474 - 533	100	60 / 60	plus

Contig Sequence (533 bp)

>U35_11640 533 Hv_44K_v2
ACTACTACTTGGCCCGCTTTGGTTGGACGATCGATTCCCCTCCGCCTCCCGCCGCCGCCG
CCGCCGCCGCCGCCGCCGATTCATCCGTCCCCTCCCCTCCTCTCCGACGCGCCGGCCGCC
GACCCATCGCCCGGAGCTCCCGCTCTCCCTCCACCACCCAACCCACCCACCCAACCCCGG
CGCGCTCCAGCAGTCGAGGCGATGGCGACCGCGGCGGCGACCGCGCTGTGGCAGCCGCAG
GAGGAGGGGCTGCGCGAGATCTGCGCGGTGCTGGAGGCGCACATCTCCCCCAACTCGGAC
CAGGCCCGCATCTGGCAGCAGCTCCAGCACTACGCCCAGTTCCCCGATTTCAACAACTAC
CTCGTCTTCCTCCTCGCCAGAGGACAGGGAAAATCTTTTGAAGTACGGCAAGCTGCCGGT
CTTCTATAGAAAAACAATCTGCGAGCGGCCTTTGTTTCCATGCCCCCTTCATGGCAGCAA
TACATCAAATCGGAGTTATCGCCATGTATAGGGGCAAATAACAGGGCAATTAG

Homology of Contig U35_11640 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g59494.4	892	1e-53	protein\|transportin-2, putative, expressed
Brachypodium v1_2	Bradi5g27500.2	873	6e-56
Arabidopsis v10	None