barSeed - Barley Seed Development Database

Probe CUST_23444_PI390587928

Source Contig U35_11645

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23444_PI390587928	Hv_44K_v2	CTTTCATTTCTTGTAGCTTCTTGGTGAGGTGTCTACCATGTTCGTTGCCGATTGAAAAAA	812	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.895	2.089	0.693	0.805	1.396	1.101
Raw	3.269	17.097	4.856	7.571	4.718	3.401

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355096	913	3e-22	835 - 890	100	56 / 56	plus	ABC25020
MLOC	MLOC_5402.3	693	3e-22	28 - 83	100	56 / 56	minus	ABC25020
MLOC	MLOC_5402.1	1318	3e-22	554 - 609	100	56 / 56	minus	ABC25020
MLOC	MLOC_5402.2	738	3e-22	39 - 94	100	56 / 56	minus	ABC25020
JLOC1	JLOC1_3478.1	1121	1e-22	393 - 448	100	56 / 56	minus
JLOC1	JLOC1_3477.1	1161	1e-22	685 - 740	100	56 / 56	plus
Harvest21	ABC25020	883	3e-25	12 - 71	100	60 / 60	minus	ABC25020
Harvest35	U35_11645	883	3e-25	813 - 872	100	60 / 60	plus

Contig Sequence (883 bp)

>U35_11645 883 Hv_44K_v2
CCCGTGTGCTCCACCCACCTCGGCTCCGCCGCACGCAACAGCCCACCACCCACCCACCAC
CGTCCGCCCATGGAGATGGAGAGGCGGGCGGGCAGCAGCAAGCGCGCGCCGAAGGTGGTG
GCGGTCCTCGCCGGCCTGCTGGAGCGCGCCGCCAAGCGCGGCGACGCCGTCGCCGACGGC
TCGCGCTCGTGCTCGGCGGCGTTCCGGGGCCCGACGGAGAAGAAGCCGGAGATCGGCGTG
CGGCGGTACGCGGAGCGCATATACCGGTACGCCGGGTGCAGCCCGGCGTGCTTCGTGGTC
GCCTACGCCTACCTCGACCGCCTCGCCTCGCCGTCGCCGGAGGAGGAGGACGCCGCTGCG
GCGGTGGCCGTGGACTCGTACAGCGTGCACCGCCTCCTCATCACCAGCGTCATGGTCGCC
GCCAAGTTCATGGACGACATGCACTACAACAACGCCTACTTCGCGCGGGTGGGCGGGGTG
GAGCTGCGGGAGATGAACGGCCTCGAGCTCGAGTTCCTCTTCGCGCTCCGGTTCCGCCTC
AACGTCACGCCCGACGGCTTCGCGTCCTACTGCGCCGCGCTCGAGGGTGAGATGATGGCC
ACCGACACGCCGCCGCCGCTATCCCCGCCGACGGTGTTAGCCTCGCCGGAGGAGGAGGAG
GAAGAGGACGTCGCGGGAGGCATCGTCACGGCCTTCGCGGCGGCTGCTCGGGTATCGATG
ACCGAGATCACCAGATGACACGGAAACAACAACGTAATTAAGAGCTAGCCGGCCTCCGTG
CGTGGAGGGCATGCGATGCTTGCGTTGTGATTCTTTCATTTCTTGTAGCTTCTTGGTGAG
GTGTCTACCATGTTCGTTGCCGATTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_11645 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g03294.1	254	2e-61	protein\|cyclin, putative, expressed
Brachypodium v1_2	Bradi3g02530.1	263	5e-66
Arabidopsis v10	None