barSeed - Barley Seed Development Database

Probe CUST_23443_PI390587928

Source Contig U35_11646

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23443_PI390587928	Hv_44K_v2	TGGAAGAATACACAGAGTGCTGCAATAAGCTCTGATTTGATCCCATCGAGCTTGGCATCA	638	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60274.2	3019	7e-23	2353 - 2413	98	60 / 61	minus	ABC14442
MLOC	MLOC_60274.1	4097	7e-23	2377 - 2437	98	60 / 61	minus	ABC14442
MLOC	MLOC_60274.6	2997	7e-23	2343 - 2403	98	60 / 61	minus	ABC14442
MLOC	MLOC_60274.3	4054	7e-23	2356 - 2416	98	60 / 61	minus	ABC14442
MLOC	MLOC_60274.5	4124	7e-23	2346 - 2406	98	60 / 61	minus	ABC14442
MLOC	MLOC_60274.4	3399	7e-23	2346 - 2406	98	60 / 61	minus	ABC14442
JLOC1	JLOC1_39289.4	4131	4e-23	1719 - 1779	98	60 / 61	plus
JLOC1	JLOC1_39289.3	4128	4e-23	1719 - 1779	98	60 / 61	plus
JLOC1	JLOC1_39289.2	3794	4e-23	1671 - 1731	98	60 / 61	plus
JLOC1	JLOC1_39289.1	4075	4e-23	1671 - 1731	98	60 / 61	plus
Harvest21	ABC21747	723	3e-25	639 - 698	100	60 / 60	plus
Harvest35	U35_11646	723	3e-25	639 - 698	100	60 / 60	plus

Contig Sequence (723 bp)

>U35_11646 723 Hv_44K_v2
GCTTCTCAAGCCCGGGCTACTGAGCTCGGGTGTTCTGCTGCCGTTGACAGCATTTGCTCA
CTCGTTAGGAAGGACATGGCCGAGCAGGTTCATGTTGTGGGAGAAGGGACCATCGGCCGT
GTTGCCTTCACTGGCACTCATCAATGGATCATCCATGGTACTGCGGATGATCACGGGCTC
TCATCCGAGGTTGCTTCCGAGATGCATTATCAGTTCAGAGCTGGCATTAAGACTATTGCG
ATTATTCCTGTGCTACCACGCGGCGTGCTACAATTAGGATCTACTGGTGTGGTTATGGAG
AACACAAGTTTTGTGATGCATGCAAAGAAATTGTGCTCTCAGCTGAATCAGCGATCAAGT
ATGGCTGTATCTGCTTCAGTAAAAAGTACTTCGAATCAGTCGCGTCCGCTACATGGTGCC
TCAAACATCCAAGCTGCAGACAGTTCCTTCAGTCAATTCCCAGTAATACGTGAACAATAC
AGACGTGCTGATAGCGCAACTGCGTCAAGTAGCAAATCACTAAATGCATCTTTGTTTGAG
GCTGCACAACAGAATGGTCTAACTGCTAGAGAGCATCTTGTCTATTCCAAGCCTAACGAT
ATGTTTGTACAACAACCGTCTTATTGTGTTAGTCGGCTTGGAAGAATACACAGAGTGCTG
CAATAAGCTCTGATTTGATCCCATCGAGCTTGGCATCAGTGGAGCAACAGCAAATGCTGA
TGA

Homology of Contig U35_11646 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g06010.1	903	3e-84	protein\|helix-loop-helix DNA-binding protein, putative, expressed
Brachypodium v1_2	Bradi4g41970.2	897	3e-67
Arabidopsis v10	None