barSeed - Barley Seed Development Database

Probe CUST_2343_PI390587928

Source Contig U35_11431

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2343_PI390587928	Hv_44K_v2	TATTGTAGGCGTTTATCTGTCGGTTGTTAAGGGTAGTCTTATTCAACACATTATCTGAAA	579	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.775	1.651	3.035	1.891	0.547	0.596
Raw	157.487	537.019	849.588	836.748	83.175	100.048

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3646.1	3045	7e-23	148 - 204	100	57 / 57	minus	ABC25313
JLOC1	JLOC1_2190.1	2689	4e-23	188 - 244	100	57 / 57	minus
Harvest21	ABC25313	651	3e-25	580 - 639	100	60 / 60	plus	ABC25313
Harvest35	U35_11431	651	3e-25	580 - 639	100	60 / 60	plus

Contig Sequence (651 bp)

>U35_11431 651 Hv_44K_v2
GGGCACGAGGGATGAAGCAGATGTTAAGCAGAGTGCGCCGGTGGAGTATGGAGTACCAGC
GTGGGGCTTGGGCGAAGGTGATGTCGGTGCTGCAGACCGGAGGCTCTGGGTTTTCAGGTC
TCCCACCAAAGGCCATGCTTCAGAAACTGCAGATGTTCAATGGCTACCTGGAGGAGATTC
GGGCGGCGCAGTCCGAGTGGGTGATCACAGATGATCAGCTGCGTGCCGATGTCAAGGCAG
CAATAGCAGATTCAGTGCTGCCTGCATACAAGGGCTTGATTGCTAGGCTGAGATCATCTC
CAGATGCTCCGCAGGATTTGTTCATCAAGCATACCCCGGAGGATGTTGAGGCATGCATCC
AACATTTGTTCGAAGGAATTGGGAAATGATTGGTTATCTTGTAGTAGCATCTTATTGGTC
CTGCCTGTGATTTTCGTATCATCACTAATGTACTGTTGTGGCGGAGATCTGAAGTTCTGA
ACATTGATAATGGTGCCATTTTGGATTTGATGGTGTTTTGCCATGAGGTTAGGCTTTATA
TTAGACGTGGAAATCATTGTCTTCTCCAGCTCTGTAAAATATTGTAGGCGTTTATCTGTC
GGTTGTTAAGGGTAGTCTTATTCAACACATTATCTGAAAAAAAAAAAAAAA

Homology of Contig U35_11431 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g61180.1	653	3e-59	protein\|exo70 exocyst complex subunit domain containing protein, expressed
Brachypodium v1_2	Bradi2g53820.1	638	2e-66
Arabidopsis v10	None