barSeed - Barley Seed Development Database

Probe CUST_23435_PI390587928

Source Contig U35_23624

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23435_PI390587928	Hv_44K_v2	TCTTCACCATCAACACCCTCGTCCGCCTCTACATCGGCCTCTGGAAGTTGCCGGACACGG	660	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367003	1801	2e-24	640 - 699	100	60 / 60	plus	None
MLOC	MLOC_70092.1	2257	2e-24	1567 - 1626	100	60 / 60	minus	None
JLOC1	JLOC1_46496.1	1466	8e-25	630 - 689	100	60 / 60	plus
Harvest21	ABC48181	620	1e-23	559 - 619	98	60 / 61	plus
Harvest35	U35_23624	744	3e-25	661 - 720	100	60 / 60	plus

Contig Sequence (744 bp)

>U35_23624 744 Hv_44K_v2
TCGAGCACTGTTGGCCTCCTGGACTCAGAGAGCCCCCCAAGAATCCCCAAACCTCACCCG
CTCATCCGCCGCCGTCGACCATGGCCGGGCGGGCGCCGTACACCAACCTCGACCCCGTGA
GGGCGGCCGGCTTGCAGCGCATGGGCTTCGACCCGCTCGAGCTCGACCGAGCCACGGAGC
AGCTGCTCACGTACGTCTGCACCAGCCTCATCCCCGACTTCCCCTTCCCCGCCACCGGGC
GGCTCGTCGCCCGCCCCGTCTCCGACGGCGTAGACCGCATCAGCCGCCTCCCGCGCGCGC
TCCTGTGCAACATCGTCTCCCGCCTCCCCGCCTCGGACGCCGCGCGCACGGCCGCGCTCT
CCTCCCGCTGGCGCACGATCTGGCTCTCCACGCAGCCCGTCCTGGTCGACGCCTACCTCC
GGAAGGACGACTATGTCTGGCCCCCCACGCCGGCCAACTCGCGCGCCATCACCGCCGTCG
TCTCCCGCATCCTCGAGGCGCACCCGGGGCCCTTCCGCTGCGTCCACCTCGCCTGCAGCC
ACATGAACGCGTACCAGGCCCAGCTCGCGCGCTGGCTCCAGCTCCTCGCCGCCAAGGGCG
TCCAGGACCTCGTCCTCGTCAACCGCCCCTGGCCGTGCGACGTGATCCTCCCCGACGCGC
TCTTCACCATCAACACCCTCGTCCGCCTCTACATCGGCCTCTGGAAGTTGCCGGACACGG
CCCGCCTGGGAAGTTACCGGACAT

Homology of Contig U35_23624 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g13150.1	524	6e-60	protein\|OsFBX125 - F-box domain containing protein, expressed
Brachypodium v1_2	Bradi2g33570.1	512	3e-54
Arabidopsis v10	None