barSeed - Barley Seed Development Database

Probe CUST_23433_PI390587928

Source Contig U35_23627

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23433_PI390587928	Hv_44K_v2	CTACTTGTCTCACTGATTTATTCTGCCATTGTCCAGAAAAACAGTGACTTTGTTATCCAA	647	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80078.1	1478	2e-24	714 - 773	100	60 / 60	minus	ABC47436
JLOC1	JLOC1_53328.18	2967	8e-25	2100 - 2159	100	60 / 60	plus
JLOC1	JLOC1_53328.15	3472	8e-25	2605 - 2664	100	60 / 60	plus
JLOC1	JLOC1_53328.11	2897	8e-25	2572 - 2631	100	60 / 60	plus
JLOC1	JLOC1_53328.10	3439	8e-25	2572 - 2631	100	60 / 60	plus
JLOC1	JLOC1_53328.5	2859	8e-25	1992 - 2051	100	60 / 60	plus
JLOC1	JLOC1_53328.4	2933	8e-25	2066 - 2125	100	60 / 60	plus
JLOC1	JLOC1_53328.1	2942	8e-25	2075 - 2134	100	60 / 60	plus
Harvest21	ABC20362	768	3e-25	648 - 707	100	60 / 60	plus
Harvest35	U35_23627	768	3e-25	648 - 707	100	60 / 60	plus

Contig Sequence (768 bp)

>U35_23627 768 Hv_44K_v2
AAGATCCACACAAAGAATATATGCAGTCTGTTATTCACTAAATTGCTCTGAGATCAAATT
GTGCCTCACCAATTTTTCTACAAGTCTTCTATTTATACGCTCATACAAATAAATTGCTAT
TAATGCATGGCAAATTGCTAATAGTAAGAAACGTGTTGTCCAACAATATGAAGAGGTTCC
CATTCCACTTTATCTGATAGTTGTGACTTCCACCGTAAGTGCATTTGATTGGTCTGCTAA
GTCCCTTCTATTAGATTTTTTGTTTATTTTTACATGATTTACATACTTTCAAAAGCACAA
ATACAGGAACTATTTGATTTCATTGTGGCTCAGTTGGAAAGATTTGTTGAGACTTGAGAC
CGAAGGAGATGATTTCCACTTGCCTGCGGGAAGGCAAAGGGAACTGGGTTTCACCTTTTC
TTTCCCAGTACACCAAACCTTGATATCGTTAGGCACCCTCATTAAGTGGACAAAGGGATT
TTGTGTTAGTGGCATGGTACAAATAAAATGATCGCAGTACATGCTAGGCTCACAGAATGA
TATACTAAAAACATTAAATTTAGGATTCCTTTAGTATCCAATGCACATAATACCTTTAGT
TTGTTGAAATCTAACTGTATTTGGTGGTTGCTTATCCTTTCTTGTCACTACTTGTCTCAC
TGATTTATTCTGCCATTGTCCAGAAAAACAGTGACTTTGTTATCCAAGACCAATGATTAT
GCTCTTGGGTCAATATTCATGCTAATCATCATTTATTAAGCAACTGCA

Homology of Contig U35_23627 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None