barSeed - Barley Seed Development Database

Probe CUST_23432_PI390587928

Source Contig U35_23628

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23432_PI390587928	Hv_44K_v2	TTTCTGATTGATTTGGAAGTGCCAGCTTGCGAAGATGATGATACTGCTACAGCTGCAGCA	866	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.274	0.600	1.919	1.951	1.123	1.031
Raw	13.365	47.924	125.757	202.965	43.626	42.213

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369441	3388	2e-24	2466 - 2525	100	60 / 60	plus	None
MLOC	MLOC_58292.1	2721	2e-24	1261 - 1320	100	60 / 60	minus	None
MLOC	MLOC_58292.2	2167	2e-24	816 - 875	100	60 / 60	minus	None
JLOC1	JLOC1_37858.1	2486	8e-25	1297 - 1356	100	60 / 60	plus
Harvest21	ABC21334	1051	3e-25	867 - 926	100	60 / 60	plus
Harvest35	U35_23628	1052	3e-25	867 - 926	100	60 / 60	plus

Contig Sequence (1052 bp)

>U35_23628 1052 Hv_44K_v2
GAGTAGATCCCACGGAGCTTAACATCAGTGCTGATGTCCAGTCATTTCCAAGTTTCAATG
GATCTTCAACTGTCAATTCATATGCGTGCTTCAGTGCTGCGAACCAAAGCATTGGAACCT
TATCATGTAATCTGAAAAAAATCAATAACTCAGATGGCAGCTATTCTGGCATTCCACTTG
ATTCATTGTCTGCATCACGACCATGGCATCAGGTAACAGTTTCAAGTGACCTGGAGCAAA
ACAACAAGCTGATGTTTGGACACCCAACACGGCACTGTCATGAAGATCCTGATTCTGCAA
ATGGTAAGGTCAGAAAGAACTTTAATTTGAATGAAGCATTGTCAGATGGTCAAGAAGATA
TTCTTGTGGAGCAAGACGTGGGATGTTCAAGCAGTTTACAACATGTCAAAGTTGAGGGCT
CGGTATCTGGGATCTCTTGGCTCAGTAAGAAAGCTTCATGTGCAGATTGCACAGGTTTGG
AAGAGCCAAGGAAGGTGTTTGAACATTCTTATGGGACCACAGTGCTGATGAACATCAATG
AAGATATAACGGGGGCAGCTGTGGCTCTTTGCAATTTGCCAGATTCTGCTTCAACATCCG
TAGGTTGCGGAACTAAGAAGGACAAGCCTTGTGATAACATTACCGCTAAAACTCAAGAGA
GCGCTGAATGTTTACCTCTTTCACGCCAGAAACCCATGCCTGGAGATGGGCAAGCTGCTG
AAGGCATTACCAATAAGGCTGGTGCTGCTGCCTGGAATTTTATTGATCTGAATGAAGATG
CACCAAATGAAGATAATTCAGAGTCATCTGTGGTGTCAAGTGATTGCCATGTGACCTCCT
TACAGAACAACCATGCTAAGCCTAAGTTTCTGATTGATTTGGAAGTGCCAGCTTGCGAAG
ATGATGATACTGCTACAGCTGCAGCAGAGAGCATTCTTGCTTTGTCGATGGATGTGCCAG
CCACTGCAGAGATACCTGATGATATGTTGCAGTGGTTTGCAGAGCTCGCCGTATCAAGCA
TCGGCGACCATGCCGGGAAAGGGGAGGTCCAA

Homology of Contig U35_23628 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55130.2	642	5e-87	protein\|expressed protein
Brachypodium v1_2	Bradi1g08000.1	983	5e-103
Arabidopsis v10	None