barSeed - Barley Seed Development Database

Probe CUST_23421_PI390587928

Source Contig U35_11655

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23421_PI390587928	Hv_44K_v2	AGCTTTAAGGCTTCAAATGAGTTTGTACTTTGGACTATGGAAGGTGTAGCTTCAGATTAT	440	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75332.8	2982	2e-24	52 - 111	100	60 / 60	minus	ABC26036
MLOC	MLOC_75332.3	1200	2e-24	54 - 113	100	60 / 60	minus	ABC26036
MLOC	MLOC_75332.2	3284	2e-24	64 - 123	100	60 / 60	minus	ABC26036
MLOC	MLOC_75332.1	3121	2e-24	65 - 124	100	60 / 60	minus	ABC26036
MLOC	MLOC_75332.6	3041	2e-24	52 - 111	100	60 / 60	minus	ABC26036
MLOC	MLOC_75332.7	2941	2e-24	52 - 111	100	60 / 60	minus	ABC26036
MLOC	MLOC_75332.5	2057	2e-24	52 - 111	100	60 / 60	minus	ABC26036
MLOC	MLOC_75332.4	1360	2e-24	52 - 111	100	60 / 60	minus	ABC26036
MLOC	MLOC_75332.9	3182	2e-24	52 - 111	100	60 / 60	minus	ABC26036
JLOC1	JLOC1_50250.6	3125	8e-25	2988 - 3047	100	60 / 60	plus
JLOC1	JLOC1_50250.5	3037	8e-25	2900 - 2959	100	60 / 60	plus
JLOC1	JLOC1_50250.4	3129	8e-25	2992 - 3051	100	60 / 60	plus
JLOC1	JLOC1_50250.3	3462	8e-25	3325 - 3384	100	60 / 60	plus
JLOC1	JLOC1_50250.2	2821	8e-25	2684 - 2743	100	60 / 60	plus
JLOC1	JLOC1_50250.1	2573	8e-25	2436 - 2495	100	60 / 60	plus
Harvest21	ABC26036	545	3e-25	47 - 106	100	60 / 60	minus	ABC26036
Harvest35	U35_11655	546	3e-25	441 - 500	100	60 / 60	plus

Contig Sequence (546 bp)

>U35_11655 546 Hv_44K_v2
TCGCGGATGGTACCTTGCAGTGCATCGGAAACTCAAGAGAGCTGAAAACCAAGTACGGAG
GCTCATATGTCCTAACGATAACGACCGTGGCGAGTGAGGAGGCGGAGGAGGAGGTGGCAA
AGCTAGTCCGGTCCATCTCGCCGGCGGTGAGCAGGGTGTACCGCATCTCTGGGACGCAGA
AGTTCGAGATGCCAAAGCAGGAGGTGAGGATATCGGCGGTGTTCCATGCCATGGAGAGCG
CGAAGAGCAGGATGACCATTCTTGCGTGGGGCCTTGCTGATACGACACTGGAGGATGTGT
TCATCAGAGTTGCCAAGGAGAGCGAGGCATCCTCTGTCACCTGATCGGCAAGATAATCCG
ACCAAGAAGAGTCGCTGTTTGCAGTTCATCACAGTTGCAGCTTCAGAGATATCGTTGTGT
GGCAAATTGGCAGTGCACGTAGCTTTAAGGCTTCAAATGAGTTTGTACTTTGGACTATGG
AAGGTGTAGCTTCAGATTATTACATATATATATATATATATATTTCCCTAAAAAAAAAAA
AAAAAA

Homology of Contig U35_11655 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None