barSeed - Barley Seed Development Database

Probe CUST_23412_PI390587928

Source Contig U35_23635

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23412_PI390587928	Hv_44K_v2	TAAGTATCAATTTGACATGGGATTTCTGAACCCAAGTTAACGTATACAGCACATCTCAAA	275	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63844.2	2578	7e-23	2505 - 2561	100	57 / 57	plus	ABC19577
MLOC	MLOC_63844.3	2566	7e-23	2489 - 2545	100	57 / 57	plus	ABC19577
JLOC1	JLOC1_41859.2	2572	4e-23	2417 - 2473	100	57 / 57	plus
JLOC1	JLOC1_41859.1	2561	4e-23	2406 - 2462	100	57 / 57	plus
Harvest21	ABC19577	349	3e-25	276 - 335	100	60 / 60	plus	ABC19577
Harvest35	U35_23635	349	3e-25	276 - 335	100	60 / 60	plus

Contig Sequence (349 bp)

>U35_23635 349 Hv_44K_v2
GTGAAGCCATGATCCAAGCACGGTTCTGCAGGGCTGTCACGGAGCTCCAAATTACTGGAC
TTCTTCGGATGCCGAGCAAGAGAAGGCCAGATCTGGTGCAGAGAATTGCCTTCGGTCCTT
GATACCTTCATTTTTCATTAAGAATTTATGCTAGAAGCGAGCAAGGCACCGAAAGGCTAA
GAAAATGTTTCTCCTGTAGTCTATAAACATGCGGAGCCTTGTTTTGTTGTATGTGGATCT
GCATGAAGTCAATGGGCCTTTGAGCGCTTCTTCTGTAAGTATCAATTTGACATGGGATTT
CTGAACCCAAGTTAACGTATACAGCACATCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_23635 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None