barSeed - Barley Seed Development Database

Probe CUST_233_PI415269222

Source Contig TA33502_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_233_PI415269222	Hv_44K_v2	TGTACGGTTGAACCGATTGCAGTTAAACACGAGCAATAAATTTGACACCGTTCTAAAAAA	1039	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.346	3.028	1.095	0.844	0.382	0.430
Raw	1423.433	971.400	296.075	351.644	58.050	70.400

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_39624.2	3105	5e-22	2896 - 2950	100	55 / 55	plus
JLOC1	JLOC1_39624.1	2606	5e-22	2397 - 2451	100	55 / 55	plus
Harvest21	ABC08591	2007	3e-25	1937 - 1996	100	60 / 60	plus	ABC08591
Harvest35	U35_1467	3960	3e-25	3890 - 3949	100	60 / 60	plus

Contig Sequence (1101 bp)

>TA33502_4513 1101 Hv_44K_v2
ATGTATCTTGTGACTCACCGGATGGATTTGGCGAAGCCATTGAAGCAGCTAAAAGAGCTG
ATATTGTTGTTGTGATTGCCGGGTTGAACCTGACTCAGGAGAGCGAAGATCTTGATAGAG
TGACCCTTCTCCTTCCAGGCAGGCAGCAGGATCTTGTGAATATCATTGCCAGTGTAACAA
AGAAGCCTATTGTGTTGGTTATCACTGGCGGCGGTCCTGTCGATGTTGCTTTTGCGAAGC
AAGATCCAAGAATTGCAAGTGTCCTGTGGATTGGATATCCAGGGGAAGTTGGTGGACAAG
TTCTTCCAGAAATTCTTTTCGGAGAGTACAATCCAGGAGGAAAATTGCCCATGACTTGGT
ACCCCGAATCCTTCACCGCGGTTCCAATGAATGATATGAACATGAGAGCCGACCCTTCAC
GCGGCTACCCTGGAAGAACATATCGGTTTTACACCGGAGAAGTTGTGTATGGTTTTGGAT
ACGGTCTGAGCTACTCGAAGTACTCATACAACATCGTACAAGCTCCACAGAGAATTAGCC
TGTCACATTCACCGGTACCAGGCCTCATCAGTAGGAAGCCTGCATACACACGGAGGGACG
GATTGGACTGTGTCCAAGTTGAAGACATCGCATCATGTGAGTCCCTGGTATTTTCTGTCC
ACATCTCGGTCGCCAACGACGGTGCCATGGACGGGAGCCATGCCGTCTTACTGTTCGCAA
GATCGAAGTCGAGCGTTCCGGGCTTCCCTCTGAAACAGCTGGTTGGTTTCGAGCGCGTCT
ACACTGCCGCCGGCAGTTCAAAAAATGTGGCGATCACGGTGGATCCCTGCAAATATATGA
GCGCGGCCAACACCGAGGGCAGAAGGGTGCTGCTCCTGGGATCCCATCATCTCATGGTAG
GAGACGAAGTGCACGAGTTTGTCATCGAAGCATAACGAGCTGCATAGTGTGTCACTTCTA
TAGCTGCTGTATTGGGAACAGTCGGATTTACAAATGTACAGATGTATCAAAGTCATGTTG
TAAAGATTCATTGGATGCATGTACGGTTGAACCGATTGCAGTTAAACACGAGCAATAAAT
TTGACACCGTTCTAAAAAAAG

Homology of Contig TA33502_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g44840.1	771	5e-177	protein\|glycosyl hydrolase family 3 protein, putative, expressed
Brachypodium v1_2	Bradi5g16557.1	772	0.0
Arabidopsis v10	AT5G10560.1	792	9e-118	Glycosyl hydrolase family protein \| chr5:3336335-3339351 REVERSE LENGTH=792