- Probe CUST_23399_PI390587928
- Source Contig U35_11663
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23399_PI390587928 | Hv_44K_v2 | CATAATAATAAGCCGCTATTGCTTCCGTCGGAAAACCTACCGCAGTATTTTTATAAAAAA | 148 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.514 | 0.498 | 0.881 | 1.935 | 1.302 | 1.508 |
| Raw | 70.598 | 101.518 | 171.983 | 579.769 | 139.946 | 177.021 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK367284 | 1145 | 2e-24 | 1067 - 1126 | 100 | 60 / 60 | plus | ABC31683 |
| JLOC1 | JLOC1_18675.1 | 914 | 8e-25 | 834 - 893 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC31683 | 260 | 3e-25 | 146 - 205 | 100 | 60 / 60 | plus | ABC31683 |
| Harvest35 | U35_11663 | 262 | 3e-25 | 149 - 208 | 100 | 60 / 60 | plus |
Contig Sequence (262 bp)
>U35_11663 262 Hv_44K_v2 GAGGTCCTACCGGCCGTGAGGCGCCGCCGCGCCGGAGCCTCGGCGAGGGGATCCAGCTGT TCTCCTCCAAGGCTCCAACCTGGTTGGTTGGGTTCACTTGTCCCTGCAGACCCGCACATA CGTCTCTGAATCTATATCTATATCTATACATAATAATAAGCCGCTATTGCTTCCGTCGGA AAACCTACCGCAGTATTTTTATAAAAAAACTGTAATTTTTATTATTCAACCCACGCTTCA TCATTAAAAAAAAAAAAAAAAA
Homology of Contig U35_11663 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |