barSeed - Barley Seed Development Database

Probe CUST_23398_PI390587928

Source Contig U35_11664

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23398_PI390587928	Hv_44K_v2	TTCACTCTTAACGTATCGACAAACTTCCAAAGATCCGCAAAGATGTTCCGACCGATGCAG	29	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80800.2	1174	3e-21	1008 - 1067	97	58 / 60	minus	ABC04526
JLOC1	JLOC1_53793.1	1188	2e-21	112 - 171	97	58 / 60	plus
Harvest35	U35_11664	597	3e-25	30 - 89	100	60 / 60	plus

Contig Sequence (597 bp)

>U35_11664 597 Hv_44K_v2
GTTCGCTCCTTCGCCTCGCCAAGTCAAACTTCACTCTTAACGTATCGACAAACTTCCAAA
GATCCGCAAAGATGTTCCGACCGATGCAGGTCGCCATCAGGGGGGAGAGCCGCCGGGCTG
CGCCAGCGGCAGTGGCTGGCTTCGTCAGCCACTACGGCTACTACTCCACGGCCTCGAACT
CCCAAAGGTTAGCTGGGAAGGTGGCTGTGATCACCGGCGCCGCCAGCGGGATAGGCAAGG
CGACCGCCGCGGAGTTCGTCAGGAACGGCGCCAAGGTCATCCTCACCGACATCCAGGACG
ACCTCGGCCACGCCGTCGCCGCCGAGCTCGGCCCGGACGCGGCGTACGCCCGCTGCGACG
TCACGGACGAGGCGCAGATCGCTGCGGCCGTCGACCTCGCGGTGGCGCGCCACGGCCGAC
TCGACATCATGCACAACCACGCCGGCGTCACCGGGCGGATGGCCATGCACTCCGTCGGGT
CCCTCGACCTCGCCGACTTCGATCGCACCATGGCGACCAACGCCCGGTCCGCGGTCGCCG
GGATCAAGCACGCGGCGCGCGTGATGGTGCCGCGCCGGAGCGGGTGCATCATCTGCA

Homology of Contig U35_11664 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g40250.1	301	2e-69	protein\|sex determination protein tasselseed-2, putative, expressed
Brachypodium v1_2	Bradi5g13840.1	311	4e-55
Arabidopsis v10	None