barSeed - Barley Seed Development Database

Probe CUST_23396_PI390587928

Source Contig U35_11667

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23396_PI390587928	Hv_44K_v2	CGATATGAGATGGACATGCTGGCGTTTTCTGGTTGCAATCATGGTCTTAATCCTGAAGAG	551	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357608	1896	2e-24	863 - 922	100	60 / 60	plus	ABC19806
MLOC	MLOC_73926.1	1624	2e-24	616 - 675	100	60 / 60	plus	ABC19806
MLOC	MLOC_73926.2	3533	2e-24	533 - 592	100	60 / 60	plus	ABC04194 ABC19806
JLOC1	JLOC1_49244.2	2470	8e-25	515 - 574	100	60 / 60	plus
JLOC1	JLOC1_49244.1	2529	8e-25	574 - 633	100	60 / 60	plus
Harvest21	ABC27218	639	1e-23	549 - 609	98	60 / 61	plus
Harvest35	U35_11667	657	3e-25	552 - 611	100	60 / 60	plus

Contig Sequence (657 bp)

>U35_11667 657 Hv_44K_v2
CCTCGCCCCCTCCACCGCCCCCAAGAATCTACAAAAGCAATGGTTATCTGAAGATATCCT
GCAATGGAGGTCTAAATCAGATGCGTTCAGAGATATGTGACATGGTGGCAGTGGCACGTC
TGCTAAACCTCACGATGGTTGTGCCAGAACTTGACAAGAGATCATTCTGGGCAGATCAGA
GCAATTTTGGAGACATATTTGATGTGAGGCATTTCATTACCACATTAAGAGATGAAGTGC
GCATTGTCAAACGGCTACCAAAGAGGTTTGGTCCAACAGATTCAAGCATCACACTTGACA
TGTCACCTGTGAGTTGGTCAGATGAGAAGTATTACTTGCACCAGATTTTGCCACTCTTCA
GCAAATATAAAGTCATCCACTTTAACAAGACAGATGCTCGGTTAGCAAACAATGGCATCA
GTACTGAACTTCAACTGGTCAGATGCCGTGTTAATTTCCGTGCACTGAAGTTTACCCCTC
AAATTGAGGCATTGGGTAATAAACTGGTATGGAAACTTCGAGACAAGGGATCATTTGTGG
CATTGCATTTACGATATGAGATGGACATGCTGGCGTTTTCTGGTTGCAATCATGGTCTTA
ATCCTGAAGAGGCTGAGGAGCTCAAAAGAATGAGGTATGCTTATCCATGGTGGAGAG

Homology of Contig U35_11667 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g07310.1	467	3e-134	protein\|growth regulator related protein, putative, expressed
Brachypodium v1_2	Bradi1g73740.1	468	3e-143
Arabidopsis v10	AT1G14020.1	499	8e-109	O-fucosyltransferase family protein \| chr1:4802930-4805111 FORWARD LENGTH=499