barSeed - Barley Seed Development Database

Probe CUST_23390_PI390587928

Source Contig U35_23644

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23390_PI390587928	Hv_44K_v2	GTCTTAGCTTAACTGGAGAGACGAGGGAGACTATTAATTTCATCCTGTGGGCATCGATCT	955	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14543.1	2390	2e-24	97 - 156	100	60 / 60	minus	ABC07730 ABC20966
JLOC1	JLOC1_9928.3	1801	8e-25	1620 - 1679	100	60 / 60	plus
JLOC1	JLOC1_9928.2	1783	8e-25	1602 - 1661	100	60 / 60	plus
JLOC1	JLOC1_9928.1	1699	8e-25	1518 - 1577	100	60 / 60	plus
Harvest21	ABC20966	1019	3e-25	956 - 1015	100	60 / 60	plus	ABC20966
Harvest35	U35_23644	1019	3e-25	956 - 1015	100	60 / 60	plus

Contig Sequence (1019 bp)

>U35_23644 1019 Hv_44K_v2
GGTGAACAGAAGGTCGCTGATAACAAAGGGCAGTCATCATCACCAACACCTCTCTTCTCT
TTTATGAATGTGTCAAGTGGCCATAACGCCTTCACGGGACTAGCTGGAACTGGGTTTTCA
GCCTCATCATTTTCCTTTGGCTCAGCTTCTAAAGAAAGCACAAACGCTCCCCTATTTGGG
CTAAAGAGTGACGGTTCATCCTTCCCTTCTTTCAATATCGGTGGTACTAACAACAACGGG
AGTTCTGTTCCATCGCTTGTCGCTGCAGCAGAAGCACCAAAGAAATTCACCATGCCAGAG
GGCCCAGTGGAGACAGGTGAAGAGAACGAGATGGCCGTGTTCACCGCTGACTCCGCAATG
TATGAGTACCTCGATGGGGGCTGGAAGGAAAGAGGAAAAGGGGAGCTAAAGCTGAACGTC
CCAGTGTCCGGCGGCGAGAGGTCCCGGCTCGTCATGAGAGCCAAGGGCAACTACCGGCTG
GTCCTGAATGCGAGCCTGTATGACGACATGTCGCTGAAGGACATGGAGAAGAAGGGTGTG
ACGTTTGCCTGCGTCAACAGCACTGGCGAGTCACCGGCCGGGCTCACCACGTTTGCCCTC
AAGTTCAAGGACACTGGCGTCAGGGATGATTTCAAAGCCGCGGTGGAGGCGCACAAGGTG
AAGAAGGCCTCGGATGTGATGCCCAAGACGCCTGAGAGCTCCCCCAAGGTGTCTGATGAC
TGAAAGAGACCTCCCTGGTTGCGCGTTTCGATGATGTACGCTGGTCGGAGGGGTCGGAGG
GTGGAAAGGAGCTGGCTGATATTCTCCTTGTTCATTCGGAGTCTAAAGCGCACCATTTTC
TGTATTCTGCATCCCCATGTCGTAATGCCTTAGATACATTTTGTATGCACGCGGTTACTG
GTTTCCTGCTGCCGTTTTGGAACGGTTGGCTGTTGAACATTTAATTGTTGAGTCTGTCTT
AGCTTAACTGGAGAGACGAGGGAGACTATTAATTTCATCCTGTGGGCATCGATCTGAGC

Homology of Contig U35_23644 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g28190.1	473	6e-111	protein\|ranBP1 domain containing protein, expressed
Brachypodium v1_2	Bradi1g33130.1	446	2e-111
Arabidopsis v10	None