barSeed - Barley Seed Development Database

Probe CUST_23375_PI390587928

Source Contig U35_11673

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23375_PI390587928	Hv_44K_v2	GGTTGCCTGTTGAAAGGCATGAGGGAAACCATGAAATCCTGTTAAGTTGCATAAAGGAGA	611	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363069	5458	2e-24	3950 - 4009	100	60 / 60	plus	ABC18516
MLOC	MLOC_23113.1	1269	2e-24	478 - 537	100	60 / 60	minus	None
JLOC1	JLOC1_15979.2	1263	8e-25	733 - 792	100	60 / 60	plus
JLOC1	JLOC1_15979.1	1270	8e-25	733 - 792	100	60 / 60	plus
Harvest21	ABC23937	674	3e-25	612 - 671	100	60 / 60	plus
Harvest35	U35_11673	674	3e-25	612 - 671	100	60 / 60	plus

Contig Sequence (674 bp)

>U35_11673 674 Hv_44K_v2
GTTGGATGATCTTACTTTAAGACTTACTCTGGAAAGGAGAATACGGGCTGCTGGTGAGGA
AACAAAGTTGGTGGAGATATCAAAGCGGGACAAAATAATCGAAACATTAAGCGCAGAATG
TGCTGCAGCTAAATTATCTGCCCGGTGTGAACACGACAAAAATCTGGTTCTCCAGAGGCA
GTTGGACGATTCTTTGAGAGAGATATCTATGTTGCGCAGTAAGAAGATTCTGAAAGCAGA
AGAAGAAAAGGAGAACTCTAATCTAAAGAACATAGTCGAATCATTATCGGAGAAGAATTC
ATTATTGGAAAATGAACTCAGCACAGCTCGTAAAAATAGTGATGATACGATGGAGAAACT
GAAAGATGTGGAGGGAAAATGCACCCGTCTCCAGCAAAATTTGGACAAATTGCAGGAGAA
ACTTACGAACTTGGAAAATGAAAATCATGTTCTAAGGCAAAAGGCATTTAGCATTACTCC
AAAACCGCCGCCTGAGAAATTTCCTAACTCGATTGGTCTGACGAACAGCGATCAGAAGCG
CCCATTTGAATCCCCAACACCAACAAAATATCCGTCTCCTATTCAACATAGCACTGGGTC
AAGGAGGGCAAGGTTGCCTGTTGAAAGGCATGAGGGAAACCATGAAATCCTGTTAAGTTG
CATAAAGGAGAATT

Homology of Contig U35_11673 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g53740.3	791	2e-79	protein\|XI-I, putative, expressed
Brachypodium v1_2	Bradi3g57240.1	1502	8e-99
Arabidopsis v10	None