barSeed - Barley Seed Development Database

Probe CUST_23370_PI390587928

Source Contig U35_11676

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23370_PI390587928	Hv_44K_v2	TCGACCCATGCACCGTGCTCTCCATCGCCGTCTTCGACAACGCCAGGTACAAGCAGCAGA	390	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365291	3570	2e-24	2284 - 2343	100	60 / 60	plus	ABC14222
MLOC	MLOC_78455.1	2354	2e-24	1659 - 1718	100	60 / 60	plus	ABC14222
JLOC1	JLOC1_52289.1	2353	8e-25	1659 - 1718	100	60 / 60	plus
Harvest21	ABC21867	835	3e-25	391 - 450	100	60 / 60	plus
Harvest35	U35_11676	835	3e-25	391 - 450	100	60 / 60	plus

Contig Sequence (835 bp)

>U35_11676 835 Hv_44K_v2
GGCTGTCCACGGTGCACCGGCGGTCCGACGACCGGGTGGAGCCGCCGTCACGGTGGCTGA
ACCTGTGCGGCGACGAGGCCCGGCCGTACGCCGGGCGGGTGCACGTGCGCGTGTGCCTGG
AGGGCGGGTACCACGTGCTGGACGAGGCGGCGAACGTGGCGAGCGACGTGCGCGCGGCGT
CGAAGCAGCTGTCGAAGCCGCCGGTGGGGATGCTGGAGGTGGGCGTCCGCGGCGCGTCCA
ACCTGGTGCCGATGAAGATCGCAAAGGACGGCGCGAGCGGGTCGACGGACGCCTACGTGG
TGCTCAAGTACGGGCCCAAGTGGGCGCGCACGCGCACCATCCTCGACCAGTTCAACCCGC
GGTGGAACGAGCAGTACGCGTGGGACGTGTTCGACCCATGCACCGTGCTCTCCATCGCCG
TCTTCGACAACGCCAGGTACAAGCAGCAGAGCGCCGACGGGAAGCAGCAGCAGCACAAGG
ACGCGCGCATCGGGAAGCTCCGCATCCGGCTGTCGACGCTGGACACGAACCGGGTGTACG
CCATCAACTACGCGCTCACGGCGGTGCACCCGGTGGGCGTGCGCAAGATGGGCGAGCTGG
AGCTGGGCATCCGGTTCACCTGCCCGTCGTGGCTGACGCTGATGCAGGCGTACGGGAGCC
CGCTGCTGCCGCGGATGCACTACGTGAAGCCGCTGGGGCCGGCGCAGCAGGACGTGCTGC
GGCACACGGCGATGCGCATCGTGTCGGGCCGGCTGGCGCGGTCGGAGCCGCCGCTGGGGC
CGGAGGTGGTGCAGTACATGCTGGACACGGACACGCACGCCTGGAGCATGCGCCG

Homology of Contig U35_11676 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g44890.1	1055	2e-178	protein\|anthranilate phosphoribosyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g13460.1	1040	6e-180
Arabidopsis v10	AT3G03680.1	1017	2e-141	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein \| chr3:907624-910677 FORWARD LENGTH=1017