barSeed - Barley Seed Development Database

Probe CUST_23362_PI390587928

Source Contig U35_23652

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23362_PI390587928	Hv_44K_v2	ACTTTGATTACCTCAGCGAAGTGTGCAACCCTTACAGGAGCTGCATCGGCGGCGTCCATG	296	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55768.1	1882	2e-24	1008 - 1067	100	60 / 60	minus	ABC41202
MLOC	MLOC_55768.2	1899	2e-24	1101 - 1160	100	60 / 60	minus	ABC41202
JLOC1	JLOC1_36012.1	1944	8e-25	748 - 807	100	60 / 60	plus
Harvest21	ABC19120	524	3e-25	297 - 356	100	60 / 60	plus
Harvest35	U35_23652	525	3e-25	297 - 356	100	60 / 60	plus

Contig Sequence (525 bp)

>U35_23652 525 Hv_44K_v2
ATTTTTCCAACGCTGACGACCAAGCTAGTACAACTTGGGCGACATGGATCATCTTGACGA
GCAATCGTTCCTGGACGAGCTCATGTCGCTGCGCCGGGAGGAGGCGCCCGCTCTGGGTCC
GTGGCAGGCGTACCCGGGCAGCCGCATGACGATGACGACGAGCGACCTCCTCTTCTACGG
CGACGAGGTCGCCGACGAGGCGAGGAGCGGCATGGACTTGGCCGGGCCCTTTCAGCAGCC
CATGGCACCACCGCCGGCCCCGGCCGCGCCAGCGCACCGGCCGCATGAGGAGTTCAACTT
TGATTACCTCAGCGAAGTGTGCAACCCTTACAGGAGCTGCATCGGCGGCGTCCATGGGCC
TGGGGTCGTACACGCGTCCAGCCAGGCGCTCGCTCAATCTCAATATGCCCGCCAGGACAC
CATGGCGGAGAACGGCACGAGTAGCGGCAAGCTGCATCACGGCGGTGGTGGGTCGTCGTT
GTCCCCGTCGTTCGTGTTCGCAGGTGTCACCGGGGAGAGCTCGGA

Homology of Contig U35_23652 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None