barSeed - Barley Seed Development Database

Probe CUST_2335_PI390587928

Source Contig U35_23412

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2335_PI390587928	Hv_44K_v2	TTTTTTCTTGTTTGAGATGTGAAGTAAGATTGCGGGATATATGTCTGAAGAGTGTTCAGT	661	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74552.1	1993	2e-24	23 - 82	100	60 / 60	minus	ABC20899
MLOC	MLOC_74552.2	1878	2e-24	23 - 82	100	60 / 60	minus	ABC20899
JLOC1	JLOC1_49686.2	2032	8e-25	1951 - 2010	100	60 / 60	plus
JLOC1	JLOC1_49686.1	2076	8e-25	1995 - 2054	100	60 / 60	plus
Harvest21	ABC20899	724	3e-25	4 - 63	100	60 / 60	minus	ABC20899
Harvest35	U35_23412	724	3e-25	662 - 721	100	60 / 60	plus

Contig Sequence (724 bp)

>U35_23412 724 Hv_44K_v2
TTCATGTCATCTGCAAATGGGGGGCTTGGTGGAATTGGGAATAACAATGTGAACTGGGGA
ACCCCTTCTGTGCCTGCTCAAGGTGCTAACGCTGGCTCGGGCTATGGCAGTGGGAACTTT
GGTTATGGATCGACTGAAAACAACTTCAATCTGAGTCCCGGTGCTTATGGAAGGAACACT
GGATCAGGTGGCGTCAATGCTTCACTCAACCAGTCAAGCAATGGATATGGGAGGAACTTT
GGAGATTCGTCAGCGGCTGGTGGCGGCTCCATATATGGAGACACAACTTGGAGATCTGGA
TCCGAGCTTGATGGAACCAGCCCATTTGGATATGGGCTGGGGAATGCAGCTTCAGATGTT
ACAGCAAAGAGCTCAGCGGGTTACATGGGACATTAACAGATAGAGGAATGACGCCGCCTA
GGAATCTTTTTTGCATACAGCAATTCATAATAGGTTGAGGAGAGAACCGCAGGTGCATGA
GGTGCAAATTTTGAACTTCACATGATTAAAAGGCATGGGTTAGTTAATAGAGCTAACCAG
GGAGTTGGTCAAAGAGATCAGATATATATCCTTGGAAGATCATTTAAGCGTATTTGCATA
TGTAAGGTTTGAGATTGTGGTTTCGGATTTCTACAGCGAGTTTAGGTTTTGGCAACCCTG
GTTTTTTCTTGTTTGAGATGTGAAGTAAGATTGCGGGATATATGTCTGAAGAGTGTTCAG
TTGT

Homology of Contig U35_23412 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g12200.1	464	3e-56
Arabidopsis v10	None