barSeed - Barley Seed Development Database

Probe CUST_23349_PI390587928

Source Contig U35_11683

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23349_PI390587928	Hv_44K_v2	AATTTGACCCTCTCTGTTTGCTTACCTGGAGAACACTCTAGTAAGGCATCCAGTATTGAA	1018	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44984.1	3110	2e-24	2763 - 2822	100	60 / 60	minus	ABC08795 ABC21368
MLOC	MLOC_44984.5	1829	2e-24	1482 - 1541	100	60 / 60	minus	ABC08795
MLOC	MLOC_44984.6	1761	2e-24	1414 - 1473	100	60 / 60	minus	ABC08795
MLOC	MLOC_44984.2	2495	2e-24	2148 - 2207	100	60 / 60	minus	ABC08795 ABC21368
MLOC	MLOC_44984.7	1698	2e-24	1351 - 1410	100	60 / 60	minus	ABC08795
MLOC	MLOC_44984.3	1909	2e-24	1563 - 1622	100	60 / 60	minus	ABC08795
MLOC	MLOC_44984.4	1847	2e-24	1501 - 1560	100	60 / 60	minus	ABC08795
JLOC1	JLOC1_29191.5	2809	8e-25	289 - 348	100	60 / 60	plus
JLOC1	JLOC1_29191.4	2784	8e-25	289 - 348	100	60 / 60	plus
JLOC1	JLOC1_29191.3	2295	8e-25	289 - 348	100	60 / 60	plus
JLOC1	JLOC1_29191.2	2272	8e-25	288 - 347	100	60 / 60	plus
JLOC1	JLOC1_29191.1	2334	8e-25	288 - 347	100	60 / 60	plus
Harvest21	ABC26098	1078	3e-25	1019 - 1078	100	60 / 60	plus
Harvest35	U35_11683	1078	3e-25	1019 - 1078	100	60 / 60	plus

Contig Sequence (1078 bp)

>U35_11683 1078 Hv_44K_v2
TACCAGTTCTGCTGATCATGGCCAAAAGATAGGTGCCACAAGAATGGACTATCTTATGAC
AACTCCAGAGGCGGACAAGAGCTTTGATGAGGAAGACACTCTCTCAGATCAGGAATGTGA
AGTTGACTCAGTTGATTGGAACGACAATGAGAAGTCACTGTTCATCGAGGCTCTGAATAA
CCATGGGAAGGATTTTGCTCGAATTTCTTCATATGTGAAAAGCAAGTCATATGAGCAGTG
CAAGGTATTTTTCAGCAAGGCTCGCATTTCACTTGGTTTGGATTTGATCTATCAGCGGAC
TACCGATGTTGGTTTGCCGACAGGTGATGCAAATGGAGGTACGAGTGATACTGACGAGGC
ATGTGCTGCTGAGATGGATTCTCCTATTTGTAGCACAGAGTCTCCTGTGGAGATGGAGAT
GGAAGTTTGTCCTTCTGCTGATAAAACCCTTCAGGGGCATCCTCTATCTGGTATCACCTT
TAAACAGTCAGAAACTGATAGATCAGATGGGCCAGATATTGTGGACCTAACATTTGAGGA
AGGTGAGATCAAGGCAGAGGATACTAAAAATTGTAACATTCCTGTTGATCATAGACAGTC
AATTGAAGCCACTCATCAATCAACACCTTCATGTGCTCCTATCGATATCAATTCTTCTGA
GAGCACAGGGAGTATGGAGAACAGAGAGCACAGCAACCAAGTGAGTGTGCACGGCAACAG
AGCCATGGCATCTTCAACTGAGCAGCCTGTGGGAGCACATCTGGAAATCAGCTCCAGTCT
GCACAATGTTGAAGTTATTGAGCCGAGCAAGGCGTCTGAAAAGATTTGCACTCAGGTATC
CAGCAGGGAACATGCTCCCGAGAGTAGTGCACCTATCAGCGCTGGAAATTTAACCACCCC
TTGTTTCTTACCTGGAGTCATCCAGTCGAGCAAGGTGTATGAAGGGATTTGCACTAAGGA
ATCCAGTACGGAAGGACCTACGCAACAAGCACCCTTGAGTGCACACATGAAGGCTGGAAA
TTTGACCCTCTCTGTTTGCTTACCTGGAGAACACTCTAGTAAGGCATCCAGTATTGAA

Homology of Contig U35_11683 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g03550.1	1581	2e-93	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi2g38160.1	1751	8e-119
Arabidopsis v10	None