- Probe CUST_23347_PI390587928
- Source Contig U35_11684
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23347_PI390587928 | Hv_44K_v2 | AGAACATAACATCCCTGATGACATCTTTCGTCGTCGGTTTTATCATCGAGTGGAGAGTGG | 127 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_56096.2 | 6725 | 2e-24 | 4885 - 4944 | 100 | 60 / 60 | plus | ABC07979 ABC16427 |
| MLOC | MLOC_56096.3 | 4453 | 2e-24 | 2942 - 3001 | 100 | 60 / 60 | plus | ABC07979 ABC16427 |
| MLOC | MLOC_56096.1 | 4567 | 2e-24 | 3052 - 3111 | 100 | 60 / 60 | plus | ABC07979 ABC16427 |
| MLOC | AK365637 | 4137 | 7e-23 | 2641 - 2700 | 98 | 59 / 60 | plus | ABC07979 ABC16427 |
| JLOC1 | JLOC1_36260.1 | 4411 | 8e-25 | 2877 - 2936 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC22707 | 559 | 3e-25 | 128 - 187 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_11684 | 560 | 3e-25 | 128 - 187 | 100 | 60 / 60 | plus |
Contig Sequence (560 bp)
>U35_11684 560 Hv_44K_v2 ATACTTCGGAACGAAGTTGGTTGGTTTGATGAAGAAGAAAACAACTCTAGTCTTGTGGCT GCTCGGGTAGCAGTTGATGCTGCTGATGTGAAATCAGCGATAGCTGAGAGGATATCAGTG ATACTGCAGAACATAACATCCCTGATGACATCTTTCGTCGTCGGTTTTATCATCGAGTGG AGAGTGGCGATCCTTATTCTGGCCACTTTCCCTCTTCTTGTGCTTGCCAACTTCGCTCAG CAACTTTCGATGAAGGGCTTTGCTGGTGACACAGCAAAGGCACACGCCAAGAGCAGCATG GTTGCCGGTGAAGGCGTGAGCAACATTCGCACCGTGGCGGCCTTCAACGCTCAAAACAAG GTCATGTCTCTCTTCAGCCACGAGCTGCGCATACCAGAGGAGCAGATCCTGCGCCGCAGC CAGACCGCGGGTCTCCTGTACGGCCTCTCGCAGCTCTGCCTTTACTGCTCAGAAGCGCTC ATTCTCTGGTATGGTTCTCACCTCGTCCGGTCACATGGGTCGACCTTCTCCAAGGGTCAT CAAGTCTTCGTCGTCCTTGT
Homology of Contig U35_11684 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g38570.2 | 990 | 1e-82 | protein|multidrug resistance protein, putative, expressed |
| Brachypodium v1_2 | Bradi5g23600.1 | 1267 | 2e-98 | |
| Arabidopsis v10 | AT3G28860.1 | 1252 | 3e-80 | | Symbols: ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 | ATP binding cassette subfamily B19 | chr3:10870287-10877286 REVERSE LENGTH=1252 |