- Probe CUST_23345_PI390587928
- Source Contig U35_47614
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23345_PI390587928 | Hv_44K_v2 | TTGGTATTCTACTGTTGGAACTAATAACTGGACCTAAAACCTTGAGCAACGGACATGGTC | 500 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.114 | 1.449 | 1.269 | 1.110 | 0.281 | 0.459 |
| Raw | 35.508 | 75.652 | 56.369 | 76.457 | 6.057 | 12.136 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_59307.2 | 2786 | 2e-24 | 2278 - 2337 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59307.4 | 2239 | 2e-24 | 368 - 427 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_59307.1 | 2365 | 2e-24 | 645 - 704 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_59307.3 | 2115 | 2e-24 | 391 - 450 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_38589.4 | 2411 | 8e-25 | 1710 - 1769 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38589.3 | 2333 | 8e-25 | 1632 - 1691 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38589.2 | 1890 | 8e-25 | 1189 - 1248 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38589.1 | 1818 | 8e-25 | 1117 - 1176 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48820 | 563 | 3e-25 | 501 - 560 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47614 | 563 | 3e-25 | 501 - 560 | 100 | 60 / 60 | plus |
Contig Sequence (563 bp)
>U35_47614 563 Hv_44K_v2 TGGAACTTTAGTGGCAGTCAAGAGGTTAAAAGATCCCGATGTTACTGGTGAAGTCCAATT CCAGACAGAACTTGAGTTGATTGGCCTAGCTGTGCACAGGAACCTTTTGCGCTTGTATGG GTTTTGCATGACCTCGAAAGAACGGTTGCTCGTATATCCATATATGCCAAATGGCAGTGT TGCTGACCGCTTGAGAGAGTATCATCATGGAAAACCTTGCCTTGATTGGAGTAAACGTAT GCAGATTGCTATTGGGGCTGCAAGAGGACTACTATATCTTCATGAACAATGCAATCCTAA GATCATTCACAGGGACGTCAAAGCAGCAAACATATTGCTTGATGGAAGTTTTGAAGCAGT CGTTGGGGATTTTGGATTGGCAAAACTACTTGATCGACAAGATTCACATGTTACTACTGC AGTTCGGGGCACTGTTGGTCATATTGCTCCAGAGTATCTCTCAACGGGGCAGTCTTCAGA AAAGACTGACGTTTATGGGTTTGGTATTCTACTGTTGGAACTAATAACTGGACCTAAAAC CTTGAGCAACGGACATGGTCAGT
Homology of Contig U35_47614 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g14120.1 | 621 | 1e-121 | protein|BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed |
| Brachypodium v1_2 | Bradi3g09060.1 | 626 | 9e-124 | |
| Arabidopsis v10 | AT5G45780.1 | 614 | 7e-105 | Leucine-rich repeat protein kinase family protein | chr5:18566946-18569625 REVERSE LENGTH=614 |