barSeed - Barley Seed Development Database

Probe CUST_23341_PI390587928

Source Contig U35_47616

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23341_PI390587928	Hv_44K_v2	AGAAGATTCTCAAGTCGTCCTTCCTCGATGGAATGGCAAGAACATTCAGTGAACTCCAGA	369	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67742.1	731	7e-23	227 - 286	98	59 / 60	minus	ABC10851
MLOC	MLOC_67742.2	1338	7e-23	218 - 277	98	59 / 60	minus	ABC10851
JLOC1	JLOC1_44755.1	649	4e-23	355 - 414	98	59 / 60	plus
Harvest21	ABC48823	600	3e-25	370 - 429	100	60 / 60	plus
Harvest35	U35_47616	600	3e-25	370 - 429	100	60 / 60	plus

Contig Sequence (600 bp)

>U35_47616 600 Hv_44K_v2
GCCGTGACCCGGACGGCGGGTCCTATATGGGAGGGAGCTGGGACATGACAAATGCAGCAT
CCTTCATCCAGTACACGGTCAGCAGGGGCTACGAGATCCATGGGTGGGAGCTCGGGAATG
AACTCGGTGGCAAAGCAGTCGGCACCTCGATCGCCGCCGACCAATATGCCAAAGACGCGA
CCTTTCTAAAGTGGGTGTTGGAAGATACTTATGAGGACAGCCCGTCGAAGCCGCTACTGC
TCGCTCCGGGAAGCTTCTTCGACGAAGACTGGTTCGGCGAGTTCATCGCCAAAACGAGTC
CAGATATCGTCAGTGTGGTCTCCCACCACATCTACAATCTAGGGCCAGGGGTGGACACAC
ACATCGTCGAGAAGATTCTCAAGTCGTCCTTCCTCGATGGAATGGCAAGAACATTCAGTG
AACTCCAGAGGTTGCTGAAAACCGCAGGGACGTCGGCCGTCGCGTGGGTCGGCGAGGCTG
GAGGGGCTTACAACAGTGGTCACCACCTTGTCACCGACGCGTTTGTGTTCAGCTTCTGGT
ACCTGGACCAGCTCGGGATGTCGGCGAAGTACGACACAAAGACTTACTGCAGGCAGAGTT

Homology of Contig U35_47616 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g08090.2	526	1e-98	protein\|heparanase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi1g47760.1	539	2e-96
Arabidopsis v10	AT5G34940.2	536	5e-69	\| Symbols: AtGUS3, GUS3 \| glucuronidase 3 \| chr5:13235912-13238718 REVERSE LENGTH=536