barSeed - Barley Seed Development Database

Probe CUST_2333_PI390587928

Source Contig U35_23414

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2333_PI390587928	Hv_44K_v2	GGGAAGTTATGGACAATTTTCTTAAGATGGCATTACCAGGAACCAGTTCTGGTTTGCACA	912	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.900	1.026	1.115	0.960	0.831	1.598
Raw	19.030	13.648	15.016	16.876	4.763	12.982

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355447	3298	2e-24	1351 - 1410	100	60 / 60	plus	ABC13137 ABC13138
MLOC	MLOC_43814.1	2047	2e-24	1224 - 1283	100	60 / 60	plus	None
MLOC	MLOC_43814.2	1969	2e-24	1224 - 1283	100	60 / 60	plus	None
JLOC1	JLOC1_28340.2	1989	8e-25	1163 - 1222	100	60 / 60	plus
JLOC1	JLOC1_28340.1	2029	8e-25	1203 - 1262	100	60 / 60	plus
Harvest21	ABC19995	972	3e-25	913 - 972	100	60 / 60	plus
Harvest35	U35_23414	972	3e-25	913 - 972	100	60 / 60	plus

Contig Sequence (972 bp)

>U35_23414 972 Hv_44K_v2
TGGTAGGAATGATACAGAACACCGAGAAGAATATACTCCTTTTGAATCAAGCTCGTCTTC
AGGCAATGGAACGTGCTGATAAAATTCTTAAAGAAAAGGAAGCGTTGCAGAGAAAGATAA
GCATTTTAGAGACGAGGTTGTCAGAAACAGATGCACAACATAAGCTTTCAAGTGAAGGGA
ATTTCAGTGAGTCTCCACTAGCATTGGAGTTTGATGTTCTAAAGGAAGAGAACATTCTAC
TGAAGGAGGACATCGAATTCTTTAAATCAAAACTTATAGAGGTTGCCAACACAGAGGAGG
GTATATTCAAATTGGAGAAAGAGCGTGCTCTTTTAGATGCTTCCCTTAGGGAACTGGAGT
CCAGATTTATAGCTGCACAAGCAGATATGATGAAACTTGGTCCTAGGGATGCCTGGTGGG
AGAAAGTAGAAAAATTGGAAGACTTGCTTGAGACCACAGCAAACCAAGTAGAGCGTGCTG
CTGTGATATTGGACAACAATCATGATCTGCAGGATAAGCTTGACAAATTAGTGGCATCGC
TGCAAGCAGCAAATATTTCAAAGTTTTCTTCTTCTCTTGTTGATCTTTTGCAGCAAAAGG
TCAAATTGGTAGAAGAACGCTTCCAAGCATGTAACCGTGAAATGCATTCTCAGATTAAAC
TGTATGAGCACTCAATAGTGGAATTTCATGATACCCTTAGCAAACTAATAGAGGAAAGTG
AGAAAAGATCACTGGAGAATTTTACAGGAAACATGCCTTCGGAATTGTGGAGCAAAATTT
CCCTTTTAATTGATGGATGGTTACTGGAGAAGAAAATATCTTACAATGACGCAAGTTTGC
TACGAGAAATGGTTCGGAAAAGGGACAGCCGTCTTCGGGAAGCGTACTTGTCATACAGAG
GTACTGAAAACAGGGAAGTTATGGACAATTTTCTTAAGATGGCATTACCAGGAACCAGTT
CTGGTTTGCACA

Homology of Contig U35_23414 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g45720.4	724	3e-147	protein\|starch synthase, putative, expressed
Brachypodium v1_2	Bradi2g18810.1	922	1e-175
Arabidopsis v10	AT4G18240.1	1040	1e-66	\| Symbols: ATSS4, SSIV, SS4 \| starch synthase 4 \| chr4:10082221-10087044 FORWARD LENGTH=1040