- Probe CUST_23336_PI390587928
- Source Contig U35_47619
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23336_PI390587928 | Hv_44K_v2 | CATGCCGTGGCCATACGGTTTGTGATGGACAGGGGAGAGTGCTTCTTTTATTTTGTTGAA | 139 | GeneList: purple MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.280 | 0.335 | 0.939 | 2.186 | 1.262 | 1.947 |
| Raw | 110.799 | 205.359 | 513.340 | 1956.622 | 383.472 | 642.275 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC48830 | 297 | 3e-25 | 140 - 199 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47619 | 297 | 3e-25 | 140 - 199 | 100 | 60 / 60 | plus |
Contig Sequence (297 bp)
>U35_47619 297 Hv_44K_v2 AANCGAGATAAAACTCCTCCTCCTCCGCACCCCCGCCGGAGATTCCCCGGAACCGCCTTC GCGCCCAAGTTAAATGATGGACGGNAGGGGTNNGAGATAGGGTTACTTNTTGGTCCTATG CCTCGAGCCATTTTTGCGCCATGCCGTGGCCATACGGTTTGTGATGGACAGGGGAGAGTG CTTCTTTTATTTTGTTGAANAAGAAGGGGACACAGTNCATGTGTCATTGGGGGGGAGCAA GGCANACACCCCGTGGCACTATAGCGAGGATGGTGTCGATCTCGTGGTGAAAGACCC
Homology of Contig U35_47619 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |