barSeed - Barley Seed Development Database

Probe CUST_23319_PI390587928

Source Contig U35_5590

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23319_PI390587928	Hv_44K_v2	CAGTCCTGGAGAGGCGATGGATCATATGTTCAATTTATAAATTATGAATGAAGAAGTTCT	1367	GeneList: yellowgreen MasterList: Hydrolysis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.655	2.855	2.347	1.163	0.351	0.453
Raw	13.138	95.391	63.008	47.311	3.263	6.785

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64936.2	1627	2e-24	10 - 69	100	60 / 60	minus	ABC16010
MLOC	MLOC_64936.1	2118	7e-23	2049 - 2108	98	59 / 60	plus	ABC16010
Harvest21	ABC16010	660	3e-25	31 - 90	100	60 / 60	minus	ABC16010
Harvest35	U35_5590	1457	3e-25	1368 - 1427	100	60 / 60	plus

Contig Sequence (1457 bp)

>U35_5590 1457 Hv_44K_v2
CGACGGCGGACATGTGGGTGGACAACGTGTCGCTGCAGCCGTTCAGCAAGGAGGAGTGGA
GCTCCCACCGGCACGCGGCCGTCAAGCAGGCCCGGAAGAGGACTGTGCGGCTCCGCGCCA
GGGACGCGGCCGGCAACCCGGTGCCGGGCGCGCGGGTGCACGTCCGGCAGGTCCGGAGCG
GCTTCCCGCTGGGGTCGGCGATGAGCCACGAGATCATCAACAACGAGAAATACCAGCAGT
GGTTCGCCAAGCGGTTCACGGTGACCACCTTCGAGAACGAGATGAAGTGGTACAGCACGG
AGTGGACGCAGGGGCACGAGGACTACTCCGTGCCCGACGCGATGCTCCGGTTCGCGCGCG
CCCACGGCATCGCGGTGCGCGGGCACAACGTGTTCTGGGACGACCCCAGCACGCAGCTGG
GGTGGGTCAAGGCCCTCAGCTGCGACCAGCTCCGCGCCGCCACCGCCCACCGGATGAAGT
CGGTCATGTCGCGGTACGCCGGCAAGGTGATCGCGTGGGACGTGGTGAACGAGAACCTGC
ACTTCGACTACTTCGAGGACAAGTTCGGGGCGGGCGCGTCGGCGGCCTTCTACCAGAAGG
CGCACGGCATGGACGGCGGCGCGCTCATGTCCATGAACGACTTCAACACGCTGGAGCAGC
CCGCCGACCAGAGCGGCCTCCCCAGCAAGTACCTCAGCAAGCTATCGCAGATCAAGGACG
CCTTCCCCGGCAACGGCGTCGGCGTCCGGATGGCCATCGGCCTCGAGGGCCACTTCGGCG
CCACGCCCAACATCCCCTACGTCCGGGCGGCGCTCGACACCCTGTCGCAGGCCGGCGTGC
CCATCTGGCTCACGGAGATCGACGTCAAGCCGGGGCCGGACCAGGCGCACCACCTGGAGC
AGGTGCTCAGGGAGGTGTACTCGCACCCGGCCGTGCACGGCATCGTGCTCTGGACGGCGT
GGCACCCGCAGGGCTGCTACGTCATGTGCCTCACCGACGACAACTTCAACAACCTCCCCG
TCGGCGACACGGTCGACAAGCTCATCGCCGAGTGGAAGACGAGCTCGCACGTCGGCGTGG
CCGACGCCGACGGGCACTACGATGCCGAGCTGTTCCACGGGGACTACAATGTCACCGTCA
CCCACCCGGCGGCGGCGGCCAACTCCACCGTCGTGCAGAGCCTCAGCGTCCACAGGGAGT
CCGACGACGAGTACACCATACACGTCTAGTCTAATACTGGTACTAGCATGCATAGGCGTC
TAGCTAGCGCCCATACGGTGATTTCAGATATGCCTGCCATTGATTGTTCTTGATTTAGAG
CATTGTTGTTGGGATTTCATTGGCGCCCGCCCATGAGATTGAGTTCTCAGTCCTGGAGAG
GCGATGGATCATATGTTCAATTTATAAATTATGAATGAAGAAGTTCTATTTGTTCTTCTT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_5590 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g10478.1	580	0.0	protein\|glycosyl hydrolase family 10 protein, putative, expressed
Brachypodium v1_2	Bradi1g71040.1	580	0.0
Arabidopsis v10	AT4G33840.1	576	3e-145	Glycosyl hydrolase family 10 protein \| chr4:16223694-16226095 REVERSE LENGTH=576