barSeed - Barley Seed Development Database

Probe CUST_23317_PI390587928

Source Contig U35_5592

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23317_PI390587928	Hv_44K_v2	ATGGTAAAGAAGTTCCAGTCCCAGATCCAGAACAGAGATACTGAGATTACCCACTTACAG	686	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.107	1.206	1.302	1.109	0.701	0.547
Raw	59.504	85.481	95.690	123.654	28.416	24.278

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370791	1888	2e-24	726 - 785	100	60 / 60	plus	None
MLOC	MLOC_81750.2	2921	2e-24	1604 - 1663	100	60 / 60	plus	None
MLOC	MLOC_81750.1	1641	2e-24	492 - 551	100	60 / 60	plus	None
JLOC1	JLOC1_54381.1	1736	8e-25	462 - 521	100	60 / 60	plus
Harvest21	ABC12312	749	3e-25	687 - 746	100	60 / 60	plus
Harvest35	U35_5592	749	3e-25	687 - 746	100	60 / 60	plus

Contig Sequence (749 bp)

>U35_5592 749 Hv_44K_v2
CTAGCACCGAGCTCGCCTCCTCGACACTGCGCTCCTTTCCCCTCGCCAGACCTGGCTGCG
TCCCCACCGTCCTTGACCCCTCCCACCCCTCCTCCTTGCCCGCGTCCACTCCGTGGGCAG
ACTGCCCGGATCTCCGCGATCAGATCGCCGGGACACCCCTCCCCTTGAGCATCTGGCGTC
CTGACCTCGCCGGACTCCTCATTCTCGGACTCAGGTGGAGTCCGCCGCCGCCGCCTCCTC
CTCCCCCTTAGGCTTCCTGATTAAATGCTGGTTAGCCTCTAGTCTGCTGGCTGATTAAAA
ACAAGTAACTTTGTTGATCCTGTGCGCAAGAAGTAATGATCCGGCCCAGCTCCAAGGAGT
CACTAAATTATGACAACAATAGCCAGAAAGTTTATCCTCAACCCATTGATATGAATCAGA
ACATGGGCAGTATGATTGGAAGGATATTCAACAACATATCCTCTTTAAAGGCTGCATATA
TTCAGCTGCAGGAAGCTCACACCCCATATGACCCGGACAAGATACAAACTGCTGATAAGC
TTGTCATAGATGAGCTCACGAGCCTTTCAGAACTCAAGCATACTTACAGAGAGAGAAATC
CTAAGCCAGTAGCAGCATCACCTCAAGATTCACGCTTGCTTTCTGAAATACAGGAGCAGC
AGAACTTGTTAAAGACATACGAGGTCATGGTAAAGAAGTTCCAGTCCCAGATCCAGAACA
GAGATACTGAGATTACCCACTTACAGCAG

Homology of Contig U35_5592 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g23220.2	423	1e-74	protein\|GIL1, putative, expressed
Brachypodium v1_2	Bradi3g08110.1	423	1e-80
Arabidopsis v10	AT2G45260.1	425	9e-54	Plant protein of unknown function (DUF641) \| chr2:18664661-18665938 REVERSE LENGTH=425