barSeed - Barley Seed Development Database

Probe CUST_23313_PI390587928

Source Contig U35_5596

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23313_PI390587928	Hv_44K_v2	AGTTGATAAAGGCTCCCTTGTGTTTTGTTATGCACACGGAGAAGACTCGCCATAGTGATG	691	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.165	1.283	1.189	1.023	0.496	0.491
Raw	2889.887	5014.323	3981.353	5399.627	913.347	988.024

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367293	1017	2e-24	741 - 800	100	60 / 60	plus	ABC11817
MLOC	MLOC_71478.1	1593	2e-24	240 - 299	100	60 / 60	minus	ABC11817
JLOC1	JLOC1_47512.1	778	8e-25	319 - 378	100	60 / 60	minus
Harvest21	ABC11817	862	3e-25	692 - 751	100	60 / 60	plus	ABC11817
Harvest35	U35_5596	862	3e-25	692 - 751	100	60 / 60	plus

Contig Sequence (862 bp)

>U35_5596 862 Hv_44K_v2
GCCGCCACGCACACACGGCGCGATGCGGCGGTGGTGCTGCTCCTCCGCCGGCGGCCTTGC
CCGCCGCTTCCTCTCCGCCCCCACCGCCGTCCATGCCCGCCCGCCCGTGCCCTCCCTCCC
CTTCCGGCGCGACCACTCCCACTCCCACTCCCACGCGCCTCTGCCCATCATGGGCTCGCT
GTTCCACTCGGCGGCGGCCGCTGCGATCGTCCGGCCTCCGGTGATGGCGATGCAGCTGCG
CCACTACGCCATCAAGGGCAGGTCCCGCGCGCCGACCACGCCCACCATCTCCAAAGTCAA
GAAATACAAGATGAAGGCACCCTCGTCCATGAAGTTCCGCTTCAGAACGATGAAGGACGG
CCAGATCCGCAGGTGGAGGGCCGGCAAGCGCCACAACGCACACCAAAAGTCCAAGGAAGC
AAAGCGAAGACTTCGGAAGCCTGCTTTAGTGCATTTAGCTTATGCAAAAGTTATAAAGAA
GCTCAACTTCTGTGGCTAGGAAATGGATGAATGCAGGATGCGGATTGGCGCATGAATCTG
ATCGATGAAATACTGATTGCCAATTGTAATCTTCTTAGATTTGTCCTTAGATGCATTATC
ATCAGATTTTTGTGCTCTTATCTGTTCACCAATACTGATGAGCATTTTATCGTATTATCA
TCTGCTTGTTTTCTACACAATCTAGTCTTCTAGTTGATAAAGGCTCCCTTGTGTTTTGTT
ATGCACACGGAGAAGACTCGCCATAGTGATGATGGCCAACCTGCTGCCAGTAAAGAAACT
CAATGTTCCTTATCCTAGCTTCAGATTCAGTGAGCTTCACATGCCAATGTTTTGACCTGG
TGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5596 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g42860.1	157	1e-55	protein\|ribosomal protein L35, putative, expressed
Brachypodium v1_2	Bradi3g34580.1	163	7e-87
Arabidopsis v10	None