barSeed - Barley Seed Development Database

Probe CUST_23309_PI390587928

Source Contig U35_10600

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23309_PI390587928	Hv_44K_v2	ATAAGATTGAAATATGGAAGCCAATTCGGTCATCCCTCGGCAACATCGAGCAGATGATGG	529	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67639.2	2703	2e-24	2348 - 2407	100	60 / 60	minus	ABC16308
MLOC	MLOC_67639.1	2891	2e-24	2386 - 2445	100	60 / 60	minus	ABC16308
JLOC1	JLOC1_44678.1	2702	8e-25	265 - 324	100	60 / 60	plus
Harvest35	U35_10600	632	3e-25	530 - 589	100	60 / 60	plus

Contig Sequence (632 bp)

>U35_10600 632 Hv_44K_v2
AGTCCCAGTCCCAGTCCAGTTCCGTCGCCCCCGTTTCGCACTCGAGTCCGTGGCATCTCG
TCCCTTTCCTCCCCGCTCCGCGCCGCGCGGACGCCGAGCCGGGACCAGATCAAAGCCACC
GCCACCACCACCACCACCACCACCACCACTGCGTTACTCCCGCTCCACTCCGCTCCGCTC
CCCCTCCCCGCCCGCCGCCGTCGTCCCCCGCCGCTGCAGCGCCAGGAGGCGGAGATGAAG
CCCAAGAGCCTCCCGTTCATCGCCTTCGAGCACAAGCGGGATGCCTATGGCTTCGCTGTG
CGCCCCCAACACTTGCAGCGTTACAAGGAGTACGCAGGCATCTACAAGGAGGAGGAGGAG
GAGAGATCCGATAGATGGAAGAATTTCCTTGAGAGGCGGTCTGAGTCATCTGGACATGAT
GCCAAGGTTGCACTGTCTGCGGACAAAGTCGAATCTGTAGTTTGCGTTGAGGAGAATTCT
GAGAATGGGAGTTCTGAATTGTTGCATGAGAGGAGTGCACAAGGGCCACATAAGATTGAA
ATATGGAAGCCAATTCGGTCATCCCTCGGCAACATCGAGCAGATGATGGGTATGCGTGTT
GAGAAGAAGTATTTGTCTGCTGGAGGTTGCAG

Homology of Contig U35_10600 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None