- Probe CUST_232_PI390587928
- Source Contig U35_44030
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_232_PI390587928 | Hv_44K_v2 | ACATCTACTACATCAACGACCGGCTGGACAAGCGGACGTGGACATACATCTTCGGCGCGT | 392 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK369583 | 2280 | 2e-24 | 998 - 1057 | 100 | 60 / 60 | plus | ABC08128 |
| MLOC | MLOC_54960.1 | 4445 | 2e-24 | 3309 - 3368 | 100 | 60 / 60 | minus | ABC08128 |
| MLOC | MLOC_54960.3 | 2649 | 2e-24 | 1322 - 1381 | 100 | 60 / 60 | minus | ABC08128 |
| MLOC | MLOC_54960.4 | 2067 | 2e-24 | 1244 - 1303 | 100 | 60 / 60 | minus | ABC08128 |
| MLOC | MLOC_54960.2 | 2493 | 2e-24 | 1357 - 1416 | 100 | 60 / 60 | minus | ABC08128 |
| MLOC | AK376258 | 1945 | 9e-22 | 563 - 620 | 98 | 57 / 58 | plus | ABC08128 ABC17639 |
| MLOC | MLOC_34872.1 | 1594 | 9e-22 | 847 - 904 | 98 | 57 / 58 | plus | ABC08128 |
| JLOC1 | JLOC1_35417.1 | 3006 | 8e-25 | 1484 - 1543 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_22532.1 | 1465 | 5e-22 | 718 - 775 | 98 | 57 / 58 | plus | |
| Harvest21 | ABC08128 | 1890 | 3e-25 | 520 - 579 | 100 | 60 / 60 | plus | ABC08128 |
| Harvest35 | U35_44030 | 597 | 3e-25 | 393 - 452 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_2546 | 2376 | 3e-25 | 982 - 1041 | 100 | 60 / 60 | plus |
Contig Sequence (597 bp)
>U35_44030 597 Hv_44K_v2 CAGCCGCCCCGGCGCCGCGCCCGCCGGCCGACCTCTCACTCTGTCTACACCATCACCTAC GAGCTAGGGGTGGTAGGCTACGAGCCCGCAACCCTGCTCCGTGTAGCACACCATTACTTA CTCCTTCTCGCAGCTGGGGATGCTCTCGGGCATCCTGCTGCAGCTCTGGTACGGCTTCCT GGGCAGCTGGACCGCCTACCTCATCAGCGTCCTCTACGTCGAGTACCGCTCCCGCAAGGA GAAGGAGGGCGTCAGCTTCAAGAACCACGTCATCCAGTGGTTCGAGGTGCTCGACGGGCT GCTGGGCCCGTACTGGAAGGCGGCCGGGCTGGCCTTCAACTGCACGTTCCTCCTCTTCGG CACCGTCATCCAGCTGATCGCCTGCGCCAGCAACATCTACTACATCAACGACCGGCTGGA CAAGCGGACGTGGACATACATCTTCGGCGCGTGCTGCGCGACGACGGTGTTCATCCCGTC GTTCCACAACTACCGGATCTGGTCCTTCCTGGGGCTGGGCATGACCACCTACACCGGCTG GTACCTCGCCATCGCCGCGCTCATCAACGGCCAGGTCGAGGGCGTCACCCACACCGG
Homology of Contig U35_44030 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g63770.1 | 493 | 5e-110 | protein|transmembrane amino acid transporter protein, putative, expressed |
| Brachypodium v1_2 | Bradi2g55340.1 | 490 | 2e-112 | |
| Arabidopsis v10 | AT2G38120.1 | 485 | 1e-102 | | Symbols: AUX1, WAV5, PIR1, MAP1 | Transmembrane amino acid transporter family protein | chr2:15973493-15976792 FORWARD LENGTH=485 |