barSeed - Barley Seed Development Database

Probe CUST_23299_PI390587928

Source Contig U35_10620

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23299_PI390587928	Hv_44K_v2	ACATACCTGCTGCGGATCGTGAACACGGCGCTCTTTTCGGAGTACTACTTCAAGGTCGCC	316	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68201.2	2021	2e-24	729 - 788	100	60 / 60	plus	ABC26545 ABC39897 ABC40171
MLOC	MLOC_68201.1	2041	2e-24	1279 - 1338	100	60 / 60	minus	ABC26545 ABC39897 ABC40171
JLOC1	JLOC1_45106.1	2000	8e-25	819 - 878	100	60 / 60	plus
Harvest21	ABC40169	545	3e-25	316 - 375	100	60 / 60	plus
Harvest35	U35_10620	546	3e-25	317 - 376	100	60 / 60	plus

Contig Sequence (546 bp)

>U35_10620 546 Hv_44K_v2
CCGCTTCAACGTCACCGGCCAGGTTGGCACGCTGTGGTGGCACGCTCATGTCACCTGCCT
CCGCGCCACCGTCGCCGGCGCCTTCATCATCCGCCCCAAGGGCGGGAGGTACCCCTTCCC
GACGCCCGCCAAGGACGTCCCCATCATCATCGGCGAGTGGTGGGAGCTCGACCTCGTCGA
GCTCGACAGGAGGATGCATGACGGCAACTTCGACGACAACCCGCTGTCGGCCACCATCAA
CGGCAAGCTGGGCGACCTCAGCAATTGCTCCGGCAAGCCGGAGGAGAGCTTCGTCCTCGA
CGTGGTGCGCGGGAAGACATACCTGCTGCGGATCGTGAACACGGCGCTCTTTTCGGAGTA
CTACTTCAAGGTCGCCGGGCACACGTTCACGGTGGTGGGCGCTGACGCGAACTACCTGAC
GCCGTACAAGACGGACATGGTGAGCGTCGCGCCAGGGGAGGCCATCGACGTGCTCATGGC
CGNCGACGCCCCGCCCGCGCACTACCACATGCTGGCGCTCGCGAACCAGCCGCCGGAGCC
TGACCT

Homology of Contig U35_10620 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g42200.1	591	9e-114	protein\|laccase precursor protein, putative, expressed
Brachypodium v1_2	Bradi4g11780.1	592	6e-120
Arabidopsis v10	AT3G09220.1	567	2e-51	\| Symbols: LAC7 \| laccase 7 \| chr3:2827434-2830477 REVERSE LENGTH=567