barSeed - Barley Seed Development Database

Probe CUST_23293_PI390587928

Source Contig U35_10627

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23293_PI390587928	Hv_44K_v2	AGAATCCTCTAATCAATCTATGTGTTGGTTCGTCCTTGATCAACCTCTCCCTGGGCTTCA	825	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.963	1.576	2.257	2.272	0.736	0.519
Raw	51.503	141.377	165.824	270.954	29.512	22.948

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373628	3068	2e-24	2470 - 2529	100	60 / 60	plus	None
MLOC	MLOC_51339.1	3440	2e-24	2838 - 2897	100	60 / 60	plus	None
JLOC1	JLOC1_32793.1	4560	8e-25	1998 - 2057	100	60 / 60	minus
Harvest35	U35_10627	1081	3e-25	826 - 885	100	60 / 60	plus

Contig Sequence (1081 bp)

>U35_10627 1081 Hv_44K_v2
GCGCTGATATCCCAGACCATCAGAAACCTTGGTGGCTTGATGGGGAAGTAAAGATGCAGC
TTGCCAAACTTTACTACAACAAAGGCATAATGAAGGAATTTGTGGAAACCATTTTTCTTC
CCATTCTTGAGACACTGGATATTGAGTATGCTAATCGAAGGGTCAAGGTGCATAGGAAGC
TTACAAATGATGTTCTGCAGGAAAGAACTAAAGTGCTGGGTGAAGCACGTCAAGACAGTG
TATTTCAAGGATGCAGGCCTATAGCATCAACTGCAGAGTTAGTGAAGGCAAACAGAGCAA
AGAGATTGCTAGAGAAAAGGGCAGCGTCAAATGATGATATGATGAAAGATGATACACGGA
GAGCAAAGCAGGCACCTCCTCTTCCTGGTCTGCTGACAAATGTGGACAACCATCAGCTTG
TGTTAGATCTCTGCCGAACATTGACTTTGCTCCAGCGATACTTTGAGGCGCTGCAAATTA
TCAATCATGCTCTTAAACTTGGAAATGAGCCCCTCTCTGATGACATCAAGGAGGAACTGC
GGTCCTTGGGCGCTGAAATAGCATACAGAGCTCCAGATCCCAGTCCTGGTTTTGATTATG
TCCGTTATGTAGTTCACAAGCACCCGCAATCCATCTCTGCGTGGAACTCCTACTACAAGG
TGACATCAAGAACAGAAGAGAAAGGTCATTTTAAGTTTCTTCTTCGCGCAAGAAGGGACC
CCAAGTGTGTGCCTCCTAAAATCATATCTGGGCATCGGTTTACTGCTATCAGTCAACACC
AGTCCGCTGTTCGGGATTACCTGGAAGCGTACAGGCTGGACCCGGAGAATCCTCTAATCA
ATCTATGTGTTGGTTCGTCCTTGATCAACCTCTCCCTGGGCTTCAGGCTTCAGAACAAGA
ACCAGTGCATCGTCCAGGCGTTTGCGTTCCTCTACAAGTGCCTGCGCATCGGCAGCAACA
GGCAGGAGGCCCTGTACAACATTGCCCGGGCTTATCACCATGTCGGCCTCAAAACCCTGG
CGGCCATCTACTACGAGAAGGTTTTAGCCATGGAAGTGGAAGATCACCCCATACCCAAGC
T

Homology of Contig U35_10627 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g16540.1	901	1e-167	protein\|tetratricopeptide repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g08940.1	902	0.0
Arabidopsis v10	AT1G17680.1	896	2e-74	tetratricopeptide repeat (TPR)-containing protein \| chr1:6076388-6082160 FORWARD LENGTH=896