barSeed - Barley Seed Development Database

Probe CUST_23286_PI390587928

Source Contig U35_22605

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23286_PI390587928	Hv_44K_v2	TCTCAAGACAGTACATCGACAGCCATAGGTAACATTGTGGCCCTTCTACACTCATTTTTT	804	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13886.1	2855	2e-24	1652 - 1711	100	60 / 60	plus	ABC12535
JLOC1	JLOC1_9442.1	2234	8e-25	991 - 1050	100	60 / 60	plus
Harvest21	ABC17543	864	3e-25	805 - 864	100	60 / 60	plus
Harvest35	U35_22605	864	3e-25	805 - 864	100	60 / 60	plus

Contig Sequence (864 bp)

>U35_22605 864 Hv_44K_v2
GCATACTTCTATGGTCATCTTCCAAGCAAGTTAATTGTCCGGATCCTCAACGTGCTGGGT
GTTAGCACCAAGACTCCTTTCTCGGAATCCTTTGCTCAATATTTAGGGTCTTCAAATTCT
TCTATTTGCCCACCACCAGAATATTTTGCCAACCTTTTGCTAGGCCTTGTTAATAATGTC
ATACCTCCTTTGAGTAGCAAGTCCAAATCAAACCCAGCAGATGCTTCTGGCGGACGCACA
AATTTCAGCAAGCCTCATGCATCTACGCAAGCTGGTGGAAATAGTAACACCGATGCTCAG
AGGGCATTTTATCAAAATCAGGATCCTGGGTCATACACACAGCTTGTTTTGGAAACAGCA
GCTATTGAGATTCTCTCACTTTCTGTGCCAGCTTCTCAAATAGTGTCCTCTCTAGTTCAA
TTAATAGCTCATGTACAAGCAATGCTTATACAGTCTAATACTGGTCAAGGAATGTCTGCT
GGTTTGGGCCAAAACTCTGGGCTGCCAACCTCTCCTTCAGGCGCGGGTGCCGAGTCTGCA
GGTGCTAGCCGAGCAAACACTTCAGCAAGTGGAATCAGTGCTAACTTTGTTTCTAGAAGT
GGTTACTCTTGTCAGCAGTTGTCTGTTTTGATGATTCAAGCATGTGGCTTCTTGCTGGCA
CAACTCCCACCAGAATTTCACATGCAACTTTACTCAGAAGCAGCTCGAATCATAAAAGAT
TGTCGTTGGCTTTCTGATAGTTCGAGGCCTGTGAAAGAGCTTAACTCAGCTGTTGGTTAC
GCACTTCTGGACCCAACATGGGCTTCTCAAGACAGTACATCGACAGCCATAGGTAACATT
GTGGCCCTTCTACACTCATTTTTT

Homology of Contig U35_22605 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g49992.1	1621	1e-148	protein\|expressed protein
Brachypodium v1_2	Bradi3g56910.1	1619	1e-156
Arabidopsis v10	AT1G23230.1	1615	1e-99	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629); Has 187 Blast hits to 184 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). \| chr1:8244481-8251741 FORWARD LENGTH=1615