barSeed - Barley Seed Development Database

Probe CUST_23277_PI390587928

Source Contig U35_10634

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23277_PI390587928	Hv_44K_v2	ATCCGGAACCTCGACGACGGCACCGAGTTCGTCGTCAAGGAAGAGTTTGAGCTCCGCGAG	162	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364639	2893	2e-24	656 - 715	100	60 / 60	plus	ABC43226
MLOC	MLOC_39961.3	1812	2e-24	245 - 304	100	60 / 60	plus	None
MLOC	MLOC_39961.1	1212	2e-24	249 - 308	100	60 / 60	plus	None
MLOC	MLOC_39961.2	1906	2e-24	249 - 308	100	60 / 60	plus	None
JLOC1	JLOC1_26105.2	1889	8e-25	249 - 308	100	60 / 60	plus
JLOC1	JLOC1_26105.1	1288	8e-25	249 - 308	100	60 / 60	plus
Harvest21	ABC43224	316	3e-25	163 - 222	100	60 / 60	plus
Harvest35	U35_10634	555	3e-25	163 - 222	100	60 / 60	plus

Contig Sequence (555 bp)

>U35_10634 555 Hv_44K_v2
TCGGTCTCCTACGACGGGCCCGTCCGCCCGCCCTCGGTCTCGCCCATGCCCCGATCCAGA
TCGGACGGCGCCGTGCCCGCCAAGCCGCCGCGAGGGGCCCGGACGTCGTCGGGCTCCTCC
GAGGCCATGCCGGAGGATGACGACGCCGACCCCAGGTGCCTAATCCGGAACCTCGACGAC
GGCACCGAGTTCGTCGTCAAGGAAGAGTTTGAGCTCCGCGAGGTCCGCACGGGCCGCCAG
CTCACCCTGGAGCAGTTCCAGCTCTGCGTCGGGCGCTCCCCCATCGTGCAGGAGCTCATG
CGCCGCCAGAACATCTCCAACGACGGCGCCTCCATGCCCATCCACAGGTCCAGCTCCGAC
TCCAGCAACGGCGCCACCCGGCCCAGGCGCCGCATTAACTGGCTTCGTACCATCCGCCAC
GTCGCTGGCTCGATGGTGGCCGGCTCCCGTGACCGCCGAAGCAGCGACGAGAAGGACACG
TCATCGGAGAAGGGCGGACGCCGCTCCAGCTCANCCACAGATGACAGCCAGGATAGTGCC
GGCGCCGTGCACCAT

Homology of Contig U35_10634 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g44700.2	425	5e-65	protein\|WD-40 repeat family protein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None