barSeed - Barley Seed Development Database

Probe CUST_23273_PI390587928

Source Contig U35_22610

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23273_PI390587928	Hv_44K_v2	GTTGTATGCTTAACAAGACCTGAGCTATAGACTATGGTATTACAGTTTCCGGCCAAAAAA	707	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71588.2	1858	9e-22	38 - 92	100	55 / 55	minus	None
MLOC	MLOC_71588.1	2043	9e-22	76 - 130	100	55 / 55	minus	None
JLOC1	JLOC1_47590.1	1932	5e-22	1777 - 1831	100	55 / 55	plus
Harvest35	U35_22610	778	3e-25	708 - 767	100	60 / 60	plus

Contig Sequence (778 bp)

>U35_22610 778 Hv_44K_v2
ATTTGGTCAGTCGGTTGCATCCTAGGTGAGATTGCTATGAGGGAGCCACTGTTTCCTGGA
AAAGATTATGTTCATCAGCTGAGGCTAATTACTGAGCTGATAGGCTCACCAGATGATACG
AGCCTTGGGTTTCTTCGAAGTGATAATGCCCGCAGATACGTGAGGTCTCTTCCTCAATAC
CCGAAACAACATTTTGGTTCACGGTTCCCCAATATGTCCACTGGTGCCATGGATTTGCTT
GAGAGGATGCTCGTGTTTGATCCGAGCAAGAGGATTACTGTTAATGAGGCTCTGTGCCAT
CCGTACTTAGCATCCCTTCATGAGATAAATGATGAACCTGTCTGCCCAGCGCCTTTCAGC
TTCGACTTTGAGCAGCCATCATTTACTGAGGAAGATATCAAAGAACTTATTTGGAGGGAG
GCTCTCAAGTTCAACCCTGAACCAATTCACTGAAAAGGTCCCAATGTAGAAAAAGAAGCA
ATTTGAAATGGCAAATCTATCAGCTCCGCGGGGAAATACATGAGCTGACAGCACCATGTA
CAGAGTAATCAGTGATCAGGTCTAAGCATCTTGTCCTACGGCTTGTTGATGACACCATGA
TGTCAAAAACCTGGAAATTTAGGAAACATGAACGCTTGATCAATAATTTGTTAGCCAAAA
AGTGGGGCCTTTATCTTTATCACGTTAGGTTGTAACTACCCCCTTTGGTTGTATGCTTAA
CAAGACCTGAGCTATAGACTATGGTATTACAGTTTCCGGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_22610 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06060.1	395	2e-95	protein\|CGMC_MAPKCMGC_2_ERK.13 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
Brachypodium v1_2	Bradi3g16560.1	388	8e-99
Arabidopsis v10	AT4G01370.1	376	5e-84	\| Symbols: ATMPK4, MPK4 \| MAP kinase 4 \| chr4:567219-568889 FORWARD LENGTH=376