barSeed - Barley Seed Development Database

Probe CUST_23272_PI390587928

Source Contig U35_22611

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23272_PI390587928	Hv_44K_v2	CACAGATTGAAGATATTGTTTGGTTTGTCTGGGATAAAAGCTGCTGAGCTTCATGGCAAC	1062	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.253	1.072	1.510	1.049	0.633	0.535
Raw	155.804	203.483	257.080	266.494	58.822	55.622

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69075.1	2329	2e-24	1179 - 1238	100	60 / 60	plus	ABC23532
MLOC	MLOC_69075.3	2295	2e-24	1084 - 1143	100	60 / 60	plus	ABC23532
MLOC	MLOC_69075.2	3333	2e-24	1428 - 1487	100	60 / 60	plus	ABC23532
JLOC1	JLOC1_45756.1	2663	8e-25	1312 - 1371	100	60 / 60	plus
Harvest21	ABC17075	1058	3e-25	996 - 1055	100	60 / 60	plus
Harvest35	U35_22611	1125	3e-25	1063 - 1122	100	60 / 60	plus

Contig Sequence (1125 bp)

>U35_22611 1125 Hv_44K_v2
GACGACGAGGAGGAGGAGGATGCTGATGATGACAGCGACGAGGAGGCGGCGGTGAAGGGG
GAGAGCGGGGACGATGAGGACGAGATCGAGGAGAGCGACGACGACGACGAAGAGATCGAG
GAGAGCGGCGGGGAGGAGGATGGTGAAGCGGAAGGCGGCGAGCAAGGAGAAGAAGAGGTG
GGGGAAGATGAAGATGAAGATGCTGTGCAAGAGGAAGACGATGCACCCGAGCAGCCGGAT
CCAGCTCAATTCTTCGCGTCGTCCGAAGGAGCTTCATTCAGTGCAAGGTCGTTTCTTGAG
CTCAACTTATCGCGTCCCCTCATTCGAGCCTGTGAAGCACTGGGTTACCAGAAGCCAACA
CCGATTCAGGCCGCATGCATCCCTCTGGCATTAACAGGGAGGGATATATGCGGCAGCGCC
ATAACAGGATCAGGGAAGACGGCTGCTTTCTCTCTGCCCGTGCTGGAGCGTCTGCTTTTC
CGGCCGAAGCGTGTTCCTGCCATCAGGGTGCTTATTCTGACTCCAACCAGAGAGCTGGCT
GCGCAGGTCCATAGCATGATTGAAAAACTGGCCCAGTTTACTGATATCAGGTGCTGTCTC
ATTGTTGGTGGACTTCCAACCAAGGCACAGGAGGTGGCTTTAAGGTCAAACCCTGACATT
GTTGTTGCCACTCCTGGGCGTATAGTGGATCATCTGCGCAACTCCCTTTCTGTCGGGCTT
GAAGATCTTGCAGTTTTGATCCTTGATGAAGCTGACCGTTTGCTAGAATTGGGTTTCAGT
GTTGAAATTGGTGAGCTGATTCGCATGTGTCCTAAAAGGAGGCAGACCATGCTCTTTTCT
GCCACAATGACAGAGCAAATCGATGAGCTCGTGAAACTTTCTCTGAACAAGCCAGTCCGT
CTTGAAGCTGATCCTTCGCTGAAACGCCCTGCAACATTGACCGAAGAGGTGGTTAGGATA
CGGCGATCACGTGAAGCAACCCAAGAAGCTGTTCTGCTTGCTCTATGCTTGAAAACTTTC
AAGGAAAGAGTGATCATTTTTAGTGGGACAAAGCATTCTGCTCACAGATTGAAGATATTG
TTTGGTTTGTCTGGGATAAAAGCTGCTGAGCTTCATGGCAACCTT

Homology of Contig U35_22611 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g29660.1	803	4e-172	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi4g07397.1	898	4e-178
Arabidopsis v10	AT4G16630.1	789	4e-149	DEA(D/H)-box RNA helicase family protein \| chr4:9362176-9366449 REVERSE LENGTH=789