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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_23267_PI390587928Hv_44K_v2GAAGTTATATGTTAATCAAGGTCAAGGATAGAGCACTCGCTGAAAATGAATAAACTCATG705GeneList: sienna3
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 5.1723.3551.3970.4860.0850.079
Raw 9631.6539692.6333473.6201857.561122.717123.779



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_48056.14612e-21408 - 46110054 / 54plus
Harvest35U35_226168113e-25706 - 76510060 / 60plus



Contig Sequence (811 bp)

>U35_22616 811 Hv_44K_v2
AATGCAAGTGCACAAATTGATGAAGAATTGTTTTTTGTGCTTTGGCTTATGTATAATTAT
GGCGATTGTCAAACTGCAACATGTTTTATGATTGTTAAAATGGTCAGAAGACAATTGCTT
TTGGCCACTTCCAGATTTCTCATCATTGTGACTAGTCTACTCTGCATCATTCCATTTTTA
TCAATATTATGATTTGCACTTTTGACCAACTTGCTCATTTGCGCTAATTTACAGCTTAAG
CAAGTCAGCAAGTTGTTTGTTGCCTTTGGTGTAAAGTATGAATGGTAAATGATGTAAGTA
GAGTTGAGCTAGCGGCCGCTCCCCAACATTGTAATACAAGATCAGATCGAAAAAACTTTG
TAATACAAGATGAGGGCTACACAAATTCTACTCCTAGTCCTTGTCCTCTTCATGCTATCC
CCAGATCTGGCAAAGGCTAAGCTGGAGTGCACGGATTTCCTCATAGCCAACCAGTGCGAC
GTCGACGAGATCACATGCCAACATTACTGCTACAACCAGTTCAACGGAACCGGCAAGTGC
ATCCCCAAGAAAGGATGCCAGTGTCATTTCTGCTATGCAACTCCACCAAAGCCATCGCCT
GCTAGCAGCTCCTAGTCGTAGTTTTCTCTTTAATTTTCTGTTTAATCAAGGTCAATGTAC
AACAATTATGACACAGTTAACTACATGTACTGTGGCCTATGCTGCGAAGTTATATGTTAA
TCAAGGTCAAGGATAGAGCACTCGCTGAAAATGAATAAACTCATGGTAAATTAGCGGCCG
CTCGAGCATTATGGAAAGGGCCCAATTCGCC



Homology of Contig U35_22616 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None