barSeed - Barley Seed Development Database

Probe CUST_23261_PI390587928

Source Contig U35_10642

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23261_PI390587928	Hv_44K_v2	TCCAGCAAGTTATTTGGTCTGGTGTGTAGTTTTTAGGCCTGTGTTCCCAGGCGATTTGAT	163	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365056	3431	2e-24	1477 - 1536	100	60 / 60	minus	ABC05146
MLOC	MLOC_53633.1	1114	2e-24	1001 - 1060	100	60 / 60	plus	None
MLOC	MLOC_53633.2	1031	2e-24	918 - 977	100	60 / 60	plus	None
JLOC1	JLOC1_34474.1	966	8e-25	773 - 832	100	60 / 60	plus
Harvest35	U35_10642	306	3e-25	164 - 223	100	60 / 60	plus

Contig Sequence (306 bp)

>U35_10642 306 Hv_44K_v2
CCACGCGTCCGGGTGCCTGAGCGCCGTATGAGGGCGTTGCCTTGATCAATGTGGCTTTGC
ATGCTATCTGTAGTCCTGTGTATATTAAGGTTTAGAGTGTTTTGCCTATTAATGGATTCT
TCGCCGTCCTGTATAGTTAATTCCTTCCAGTAGTACAGTTCGTTCCAGCAAGTTATTTGG
TCTGGTGTGTAGTTTTTAGGCCTGTGTTCCCAGGCGATTTGATCGCCGTCCTGTATGGTT
TGGCAGAGATAACGCGATAAAAAAAGAAGGTGCAGACACCACTGTACGTAAAAAAAAAAA
AAAAAA

Homology of Contig U35_10642 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None