barSeed - Barley Seed Development Database

Probe CUST_23258_PI390587928

Source Contig U35_10645

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23258_PI390587928	Hv_44K_v2	ATAATAGTAGTGAGTTTGATCGCAGAGGGAGGGGTAATCAGCAAGATCATGGCTCAAGAG	662	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.511	1.686	1.169	0.735	0.357	0.264
Raw	586.405	1028.851	609.612	601.641	102.287	84.249

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69224.1	2583	2e-24	576 - 635	100	60 / 60	minus	ABC22401
MLOC	AK373500	2175	7e-23	1645 - 1704	98	59 / 60	plus	ABC22401
JLOC1	JLOC1_45861.1	2705	8e-25	1958 - 2017	100	60 / 60	plus
Harvest21	ABC22401	745	3e-25	24 - 83	100	60 / 60	minus	ABC22401
Harvest35	U35_10645	745	3e-25	663 - 722	100	60 / 60	plus

Contig Sequence (745 bp)

>U35_10645 745 Hv_44K_v2
CGATATTGACAGTTACGAGCTCGATTTGTCAAAAGGTGGTCAGACAGGTGGTGTGTCGAG
GGTGAGTTATTCTGACCTTGAGAATGCTTCTTCTGATGCAGAAGACTTCAGTGAATTTGC
TCAAAGTAGAAATTCCAATTACGGGGCAAAGGATGGAGCAACAGGTTCAGCTGATGATGA
TGAATTTGATGATCAACCCTCCCTAAGATCTAGTCATATTGCCGATTCTTGGCAGAAAAC
CAGAGGTTGGAGCGGTTCGAGCAACCGCAGAAGCGCATCCTTTGGCTCAGAGAGTAATGA
TGGGGTTATTTCTGATTTTGATGAGGATGTTGACAACGGCTTTAGATCTAAACAAAGGCG
TAAACTGGGAGGCCGTGAAACAGTTCCTGATATGGACTCTGACATGGATGATGAGTTACA
GTCAGATGATAGGAGGAACAGGTCCTCCGCAAATTTCAGAGGAAACTTCCCTGCCAGAAG
CTCTAACTTGAATAGTAGAAGCGCTAGCGGGGACCGTTATGGTATGACAAGAGGAAACGA
ACAGTTCAGGAGTGTTGATGTGCATGATGGTGGGTCGCCCTTTGATAGGAATCACAGAGG
AAGGAGTAATCAGCGAGATCATGGCTCAAGAGGTTCACAAAGAAATGCAGGAAGAAATTG
GGATAATAGTAGTGAGTTTGATCGCAGAGGGAGGGGTAATCAGCAAGATCATGGCTCAAG
AGGTCCGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_10645 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g52630.1	770	2e-84
Arabidopsis v10	None