barSeed - Barley Seed Development Database

Probe CUST_23251_PI390587928

Source Contig U35_22623

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23251_PI390587928	Hv_44K_v2	GCAACCAAATACCAACCAAATCGAACACAATGAACTAGTAATACTTCGTTTTGGGAAAAA	819	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.620	1.649	2.141	1.589	0.681	0.530
Raw	166.270	671.269	763.153	873.114	135.516	112.657

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55157.1	2279	3e-21	1 - 54	100	54 / 54	minus	None
JLOC1	JLOC1_35565.1	2138	1e-22	2001 - 2056	100	56 / 56	plus
Harvest35	U35_22623	891	3e-25	820 - 879	100	60 / 60	plus

Contig Sequence (891 bp)

>U35_22623 891 Hv_44K_v2
GCAACCGTTTCCTGCAGCGACATCATAGTTCTTGCTGCAAGAGACGCCGTCACATTTACC
GGAGGGCCGTCGGTGCCCGTCTCCCTCGGCCGACGCGACAGCCTCGTGTCCCTGGCGTCC
AACGTGAGAGCAAACATCATCGACACCGGCTTCTCCGTCGACGCGATGGCGGCGAGCTTC
GCCTCCAAGGGGCTCTCCCTGGACGACCTCGTCACCCTCTCAGGCGGGCACACGATCGGG
TCGGCGCACTGCGGCACGTTCCGGGAGCGGTTCCGGGCGGACGCGAACGGGAGCATGGTG
CCGGTGGACAGCACGATGAACGCCGAGTACGCGACGGAGCTGATGCGCGCGTGCGCGGCG
TCGGGGAGCGCGGCGGTGGGCTGCGACGACGGGTCGGCGGCGGCGTTCGACAACCGCTAC
TTCAGCAACCTGCTGGACGGGCGCGGGCTGCTGCGCACGGACGCGGTGCTGGTGCAGAAC
GCGACGACACGGGCCAGGGTGGCGGCGTTCGCGCAGAGCCAGGACAGCTTCTTCGGCAGC
TGGGCCGGCTCCTTCGCCAGGCTCACCACCCTCGGCGTCAAGACCGGCTCCGACGGCGAG
GTCCGGCGGCTCTGCTCCAGCGTCAACGGCTGAACCGATCGCCCATGGGCATGTGCATGG
GCATGTAACGTAACACGGGATACATAGGGCCATAGGGGGAGGTCGTCGAATGTACTGCTG
TTGTTAAGTAGCGAGCTGAGCTGAGGATGAGGTTGATTCGTTTGTTCTTGTTGTTGTAGC
TGATGACCAGGCTTTCTTTGCTTAGGCTGCGTTTTATCTGCAACCAAATACCAACCAAAT
CGAACACAATGAACTAGTAATACTTCGTTTTGGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_22623 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g42100.1	509	7e-95	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi5g14650.1	497	8e-112
Arabidopsis v10	AT2G24800.1	329	2e-60	Peroxidase superfamily protein \| chr2:10571255-10572570 REVERSE LENGTH=329