barSeed - Barley Seed Development Database

Probe CUST_23239_PI390587928

Source Contig U35_10650

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23239_PI390587928	Hv_44K_v2	AACAGCTGAATCCCAAATTTGAGGAGAATTATGTAAAGGGTCTTAATTACGATCCTGACC	626	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.766	1.512	1.184	0.739	0.264	0.311
Raw	170.016	224.979	157.369	149.931	19.077	25.147

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55271.1	3229	2e-24	711 - 770	100	60 / 60	minus	ABC21628
JLOC1	JLOC1_35637.1	3357	8e-25	2574 - 2633	100	60 / 60	plus
Harvest21	ABC22215	689	3e-25	627 - 686	100	60 / 60	plus
Harvest35	U35_10650	689	3e-25	627 - 686	100	60 / 60	plus

Contig Sequence (689 bp)

>U35_10650 689 Hv_44K_v2
GCTTATATTCCCCTGCTCCGACTTCCGGCATGCTGAGAACTCCATGCTTCTGCTTATGTG
CGAATATCTGATGCGATGCCCTATACAGTCTGGCCGAGATGCAGCTGTTGGTTCTTTCTT
GTGCTCCATGGTGCTTGCGGCCACTAAAGAATCAAAAAAGTTCTGCCCGGAAGCTATCAG
TTTTCTGCAAACTCTTTTGGTAACATCACTTAAAGGAGAAGTTAGCAATCAGATTAATGA
CCAGTTTATGGAGCTCAAGACATTGAAACCATGGCTTTATATCAGTGAGCAAGTGCATGA
GGTGAATCGTATGAATATCCTCGACCTAATGAGCATGGATCCTGATTCCCCGTTCTTCTC
ATCTGATAATTTCAAGGCTGGTGTACTTCTGTCTGTGGCTGAATGTTTGAGGGGCTTTGT
CATTATACATGAAGGGCTGTGCTCTTTTCCAGAAATTTTCATGCCAGTTTCTTCTCTGCT
GCAAAAAATTATGGAAAAATCCAAGTTGCCTGCCCTGTTACGAGAAATTTTCCAAGAAGT
CGTCGACTTGATTAAGAAGAGAAGTGACGAACACCATGCTTCAAGAGAGCCACTCCAAAT
GCGAAAGCAGAAGCCGGAACCAATCAAACAGCTGAATCCCAAATTTGAGGAGAATTATGT
AAAGGGTCTTAATTACGATCCTGACCGAC

Homology of Contig U35_10650 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g40110.1	930	1e-109	protein\|nop14-like family protein, expressed
Brachypodium v1_2	Bradi1g15110.1	940	1e-119
Arabidopsis v10	AT1G69070.1	901	5e-69	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPro:IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink). \| chr1:25967421-25971389 REVERSE LENGTH=901