barSeed - Barley Seed Development Database

Probe CUST_23237_PI390587928

Source Contig U35_10653

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23237_PI390587928	Hv_44K_v2	TGTAGGTCGGTTGCTACCTGTTCCGTGTTCCTATCCTACGAATGTATGTGAGATTTGGTT	343	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50055.1	2354	2e-24	12 - 71	100	60 / 60	minus	ABC03951
JLOC1	JLOC1_31980.2	2231	8e-25	2168 - 2227	100	60 / 60	plus
JLOC1	JLOC1_31980.1	2185	8e-25	2122 - 2181	100	60 / 60	plus
Harvest21	ABC29601	406	1e-23	344 - 403	98	59 / 60	plus
Harvest35	U35_10653	406	3e-25	344 - 403	100	60 / 60	plus

Contig Sequence (406 bp)

>U35_10653 406 Hv_44K_v2
CTCGGCGCCGGTCGCCTCCTTCTATCCGGCAGTGGAGGAGACGTCCGACGAGGCGGCGGC
GGCGGCGGCGGCGGCTAGCAGGGCGGTGGCACGTCGTCGTTCTTGTGGGGCAGGGCAACA
ATGGCGCTCCTTCGCGGCTCGTCTCCCATGCATCCAGCCATGAACGCACTCTGCACCACG
GTCATCGCCCAAGAAAAGCACAATAAAGTTCACCAGAAGAATCCTCGATCCGTGAATTCT
GTCTTGATTACTAGTACTACTTGTCATGTTTTGTGATCCATGATCCTTGTTGGCTTTGTA
CTGCGCTGAGGTGATTGCAACTAGGAGTAAGAGTTGATCAATGTGTAGGTCGGTTGCTAC
CTGTTCCGTGTTCCTATCCTACGAATGTATGTGAGATTTGGTTGGC

Homology of Contig U35_10653 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None