barSeed - Barley Seed Development Database

Probe CUST_23231_PI390587928

Source Contig U35_10659

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23231_PI390587928	Hv_44K_v2	TGTCTTCTGTATATGTTGGCCAGTATGTCCGCCTGTTTGAGGAAGGAGATACCATTTCTG	430	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4943.2	4241	2e-24	2812 - 2871	100	60 / 60	minus	ABC15350
MLOC	MLOC_4943.1	4251	2e-24	2815 - 2874	100	60 / 60	minus	ABC15350
JLOC1	JLOC1_3143.1	4832	8e-25	4156 - 4215	100	60 / 60	minus
JLOC1	JLOC1_3146.1	4336	8e-25	1378 - 1437	100	60 / 60	plus
Harvest21	ABC23002	541	3e-25	431 - 490	100	60 / 60	plus
Harvest35	U35_10659	543	3e-25	431 - 490	100	60 / 60	plus

Contig Sequence (543 bp)

>U35_10659 543 Hv_44K_v2
ACTTCAACGAGGTTGCCTCCAACCCAACGCCTGGTTGAGATAAAAGCAGTCGCCGATCAA
TTTCACTTTAAGATATCAACATTGCTACTTCATGCTGGGAAAGTTGTAGAAGCAATCGCA
TGGTTCCGCAAACATATCCGAAGCTTTGAACGTGTTGTCGGATCACCAGAAGTTGCTTTT
CTTCATTGGGAATGGTTTAGCAGGCAGTTCCTTGTCTTTGGTGAGCTAATAGAGACAACG
TCAACAACTGTTCCAGATACAGTATCCCCTCGGTTTGGTACTGCTGACAATGCATTGACT
GAGTGGGAATTTCAGCCAGCTTACTACTACCAGTTAGCGGCAAGTTACCTCCGAGAGAAG
AGGTGTGCTTTAGAGTGCCCTTCGTCAAGGGCAAATCTTACCGGTGATAGCGAAATACCT
GACTCAGTAATGTCTTCTGTATATGTTGGCCAGTATGTCCGCCTGTTTGAGGAAGGAGAT
ACCATTTCTGTGCTCCCNCTTTCTGATGCAGAATTTACCAGTTATGCTTTGTCAGAAGCT
GAA

Homology of Contig U35_10659 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g48380.2	704	4e-92	protein\|expressed protein
Brachypodium v1_2	Bradi3g53280.1	1178	3e-100
Arabidopsis v10	AT5G65950.1	1190	6e-57	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880), Foie gras liver health family 1 (InterPro:IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:26380290-26384960 FORWARD LENGTH=1190