- Probe CUST_2322_PI390587928
- Source Contig U35_11445
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2322_PI390587928 | Hv_44K_v2 | CACTCGTGTTCTTCACATATTTGCAACCAATATGGAGTTGCAATTTTTCAGACATCATTT | 245 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 6.610 | 5.110 | 1.529 | 0.779 | 0.208 | 0.251 |
| Raw | 243.445 | 326.728 | 77.874 | 65.413 | 4.102 | 7.302 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_53147.2 | 2003 | 2e-24 | 106 - 165 | 100 | 60 / 60 | minus | ABC48564 |
| MLOC | MLOC_53147.1 | 1735 | 2e-24 | 358 - 417 | 100 | 60 / 60 | minus | ABC48564 |
| JLOC1 | JLOC1_34116.1 | 1932 | 8e-25 | 1689 - 1748 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48564 | 367 | 3e-25 | 63 - 122 | 100 | 60 / 60 | minus | ABC48564 |
| Harvest35 | U35_11445 | 367 | 3e-25 | 246 - 305 | 100 | 60 / 60 | plus |
Contig Sequence (367 bp)
>U35_11445 367 Hv_44K_v2 CGAGCGCGACGGCTCGTTCGGCCGGGCCGACCTCGCCAGCACGGTGCGGCGGGTGATGGC GCGGGAGGACGAGGAAGGGAAGGCGCTCGCGCGCAACGCCAGGGAGTTCCAGGAGATGCT GTGCGACAGGGCCAAGCAGGAGGAGTACGTCGACGAGCTCGTGGAGCACCTGCGGCGACT GGCATAGGGCGCAGCCCTGTTCAGCCTCTAAGTCAAAATAAGCAGTCATGGAATCAATGT ACTCGCACTCGTGTTCTTCACATATTTGCAACCAATATGGAGTTGCAATTTTTCAGACAT CATTTTTAAATAAACACATGAATATTTGGAATATTAAAAGTATCTTCAACAAAAAAAAAA AAAAAAA
Homology of Contig U35_11445 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |