- Probe CUST_23223_PI390587928
- Source Contig U35_5699
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23223_PI390587928 | Hv_44K_v2 | GCATGCATGCATGTTTGCCAACACTTGCAAGTTGAATAACAAAAAACACAAAGAGTAAAA | 375 | GeneList: sienna3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.022 | 1.887 | 1.094 | 0.557 | 0.072 | 0.048 |
| Raw | 28756.667 | 27386.850 | 14411.867 | 11011.187 | 547.159 | 379.865 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_24066.1 | 528 | 5e-22 | 449 - 503 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC12924 | 487 | 3e-25 | 376 - 435 | 100 | 60 / 60 | plus | ABC12924 |
| Harvest35 | U35_5699 | 490 | 3e-25 | 376 - 435 | 100 | 60 / 60 | plus |
Contig Sequence (490 bp)
>U35_5699 490 Hv_44K_v2 AGATCAAACATACATACATCGTAGAAAAGAGATCAGTATAGGTAGCTAGCTTCGCATTTT GCCATGGCGTTTACCAAGAGGAACACAAGCGTCGTATGCTTGGCCGCCCTCGTTGTGGTT ATGGCCACCATGATGCTGTCATGTGATGCCGGAGATTACTGCTTTGATATTCCCGGACCA TGCGTGCAATCGTTATGCAAGGATGCGTGTGCTAAGAAAAATTACCCCAATAGACCCCGC TGCCAGCCCGTGACCGATGAATGCTGTTGTGACACTGCCGCAAAGCCCGACGTCGGCGAC GCCATCCGTCATGATTGATAACAGAACCTTGATTCATTATTGGACAAACTTTGTGGGTGG TCATGATATGTATATGCATGCATGCATGTTTGCCAACACTTGCAAGTTGAATAACAAAAA ACACAAAGAGTAAAAAAAAAAAAATTTGAGTTTGAGATTCGTGCTATCGCAATGTAAAAA AAAAAAAAAA
Homology of Contig U35_5699 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |