barSeed - Barley Seed Development Database

Probe CUST_23220_PI390587928

Source Contig U35_10702

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23220_PI390587928	Hv_44K_v2	GATCTTTTTGTAGGGAATTTTTGCATCTGGTCATCATTAGTGTAATTGTATCAGATCGGT	782	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15815.6	769	2e-24	623 - 682	100	60 / 60	plus	None
MLOC	MLOC_15815.2	1883	2e-24	1736 - 1795	100	60 / 60	plus	None
JLOC1	JLOC1_10864.2	1213	8e-25	960 - 1019	100	60 / 60	plus
JLOC1	JLOC1_10864.1	1162	8e-25	909 - 968	100	60 / 60	plus
Harvest35	U35_10702	860	3e-25	783 - 842	100	60 / 60	plus

Contig Sequence (860 bp)

>U35_10702 860 Hv_44K_v2
TTTGATGGTCATGCGGGAGCACTTGCTGCTGAATATCTAAAGGAACATCTGCTTGACAAC
CTTATCGAGCATCCTCAGTTCCTGAAAAACACAAAGCTTGCTCTGAAGACGACCTTCCTG
AAAACTGATGCTGATTTCTTAGAGTCGGTAACCACTCCTTATAGGGAGGATGGTTCGACT
GCTTTGGCTGCTGTTCTGGTTGGTGACCAAATCTATGTAGCAAATGTTGGCGATTCACGT
GCTATCGCTTTAAAAGGTGGCAAAGCTATCCCACTCTCAGATGACCATAAACCTAACTTA
AAGAATGAGCGAACGAGAATTGAGAATGCTGGAGGTGGTGTTAGTTATGATGGTTTTACT
TGGAGGGTTGATGGAATTCTGGCAATGTCCCGTGCATTTGGCAACCGTTCATTGAAGAAT
TATGTGATAGCAGAGCCTGACATTCAGGAAACGCAGGTCAGCAGTGATTTGGAATACCTG
GTTCTCGCTACAGATGGGCTTTGGGATGTTGTGCAAAATGAGGATGTCATTTCACTTATG
AGAGCAACGGACGAGCCTGAGGCGGCGGCGGTGAAGCTGACGGAAATGGCCCACTCTCGG
CACAGCTCAGACAACATCACATGCATTGTGGTGCGATTTCACCACTGAACATTGTAGGAT
CTGTGACGGGGATTGATGGCAGTGAAATTTTGTCACTTGAGATATCCTGAAAGAATGTAT
TCCTCTGATCTATGGCTGGTATAAGGCTTCAACAACGGTCAAAGGAACTGGCCGATTGGT
TGGATCTTTTTGTAGGGAATTTTTGCATCTGGTCATCATTAGTGTAATTGTATCAGATCG
GTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_10702 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g33549.1	353	2e-93	protein\|protein phosphatase 2C, putative, expressed
Brachypodium v1_2	Bradi1g38670.1	363	2e-107
Arabidopsis v10	AT5G53140.1	420	4e-84	Protein phosphatase 2C family protein \| chr5:21549228-21552132 FORWARD LENGTH=420